Literature DB >> 18178743

DNA microarray analysis of central carbohydrate metabolism: glycolytic/gluconeogenic carbon switch in the hyperthermophilic crenarchaeum Thermoproteus tenax.

Melanie Zaparty1, Alexander Zaigler, Claudia Stamme, Jörg Soppa, Reinhard Hensel, Bettina Siebers.   

Abstract

In order to unravel the role of regulation on transcript level in central carbohydrate metabolism (CCM) of Thermoproteus tenax, a focused DNA microarray was constructed by using 85 open reading frames involved in CCM. A transcriptional analysis comparing heterotrophic growth on glucose versus autotrophic growth on CO2-H2 was performed.

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Year:  2008        PMID： 18178743      PMCID： PMC2258856          DOI： 10.1128/JB.01524-07

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  33 in total

1.  PrimeArray: genome-scale primer design for DNA-microarray construction.

Authors:  G Raddatz; M Dehio; T F Meyer; C Dehio
Journal:  Bioinformatics       Date:  2001-01       Impact factor: 6.937

2.  Role of two different glyceraldehyde-3-phosphate dehydrogenases in controlling the reversible Embden-Meyerhof-Parnas pathway in Thermoproteus tenax: regulation on protein and transcript level.

Authors:  N A Brunner; B Siebers; R Hensel
Journal:  Extremophiles       Date:  2001-04       Impact factor: 2.395

3.  The hexokinase of the hyperthermophile Thermoproteus tenax. ATP-dependent hexokinases and ADP-dependent glucokinases, teo alternatives for glucose phosphorylation in Archaea.

Authors:  Christine Dörr; Melanie Zaparty; Britta Tjaden; Henner Brinkmann; Bettina Siebers
Journal:  J Biol Chem       Date:  2003-03-07       Impact factor: 5.157

4.  Manufacturing DNA microarrays of high spot homogeneity and reduced background signal.

Authors:  F Diehl; S Grahlmann; M Beier; J D Hoheisel
Journal:  Nucleic Acids Res       Date:  2001-04-01       Impact factor: 16.971

5.  The phosphoglucose isomerase from the hyperthermophilic archaeon Pyrococcus furiosus is a unique glycolytic enzyme that belongs to the cupin superfamily.

Authors:  C H Verhees; M A Huynen; D E Ward; E Schiltz; W M de Vos; J van der Oost
Journal:  J Biol Chem       Date:  2001-08-30       Impact factor: 5.157

6.  Construction and usage of a onefold-coverage shotgun DNA microarray to characterize the metabolism of the archaeon Haloferax volcanii.

Authors:  Alexander Zaigler; Stephan C Schuster; Jörg Soppa
Journal:  Mol Microbiol       Date:  2003-05       Impact factor: 3.501

7.  Pyruvate kinase of the hyperthermophilic crenarchaeote Thermoproteus tenax: physiological role and phylogenetic aspects.

Authors:  A Schramm; B Siebers; B Tjaden; H Brinkmann; R Hensel
Journal:  J Bacteriol       Date:  2000-04       Impact factor: 3.490

8.  Whole-genome DNA microarray analysis of a hyperthermophile and an archaeon: Pyrococcus furiosus grown on carbohydrates or peptides.

Authors:  Gerrit J Schut; Scott D Brehm; Susmita Datta; Michael W W Adams
Journal:  J Bacteriol       Date:  2003-07       Impact factor: 3.490

9.  Metabolic pathway promiscuity in the archaeon Sulfolobus solfataricus revealed by studies on glucose dehydrogenase and 2-keto-3-deoxygluconate aldolase.

Authors:  Henry J Lamble; Narinder I Heyer; Steven D Bull; David W Hough; Michael J Danson
Journal:  J Biol Chem       Date:  2003-06-24       Impact factor: 5.157

10.  Reconstruction of the central carbohydrate metabolism of Thermoproteus tenax by use of genomic and biochemical data.

Authors:  Bettina Siebers; Britta Tjaden; Klaus Michalke; Christine Dörr; Hatim Ahmed; Melanie Zaparty; Paul Gordon; Christoph W Sensen; Arne Zibat; Hans-Peter Klenk; Stephan C Schuster; Reinhard Hensel
Journal:  J Bacteriol       Date:  2004-04       Impact factor: 3.490
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  11 in total

1.  Characterization of the CRISPR/Cas subtype I-A system of the hyperthermophilic crenarchaeon Thermoproteus tenax.

Authors:  André Plagens; Britta Tjaden; Anna Hagemann; Lennart Randau; Reinhard Hensel
Journal:  J Bacteriol       Date:  2012-03-09       Impact factor: 3.490

Review 2.  Autotrophic carbon fixation in archaea.

Authors:  Ivan A Berg; Daniel Kockelkorn; W Hugo Ramos-Vera; Rafael F Say; Jan Zarzycki; Michael Hügler; Birgit E Alber; Georg Fuchs
Journal:  Nat Rev Microbiol       Date:  2010-05-10       Impact factor: 60.633

3.  Connection between multimetal(loid) methylation in methanoarchaea and central intermediates of methanogenesis.

Authors:  Frank Thomas; Roland A Diaz-Bone; Oliver Wuerfel; Britta Huber; Katrin Weidenbach; Ruth A Schmitz; Reinhard Hensel
Journal:  Appl Environ Microbiol       Date:  2011-10-14       Impact factor: 4.792

Review 4.  Carbohydrate metabolism in Archaea: current insights into unusual enzymes and pathways and their regulation.

Authors:  Christopher Bräsen; Dominik Esser; Bernadette Rauch; Bettina Siebers
Journal:  Microbiol Mol Biol Rev       Date:  2014-03       Impact factor: 11.056

5.  Unraveling the function of paralogs of the aldehyde dehydrogenase super family from Sulfolobus solfataricus.

Authors:  D Esser; T Kouril; F Talfournier; J Polkowska; T Schrader; C Bräsen; B Siebers
Journal:  Extremophiles       Date:  2013-01-08       Impact factor: 2.395

6.  Regulation of autotrophic CO2 fixation in the archaeon Thermoproteus neutrophilus.

Authors:  W Hugo Ramos-Vera; Valérie Labonté; Michael Weiss; Julia Pauly; Georg Fuchs
Journal:  J Bacteriol       Date:  2010-08-06       Impact factor: 3.490

7.  Autotrophic carbon dioxide assimilation in Thermoproteales revisited.

Authors:  W Hugo Ramos-Vera; Ivan A Berg; Georg Fuchs
Journal:  J Bacteriol       Date:  2009-05-01       Impact factor: 3.490

8.  The complete genome sequence of Thermoproteus tenax: a physiologically versatile member of the Crenarchaeota.

Authors:  Bettina Siebers; Melanie Zaparty; Guenter Raddatz; Britta Tjaden; Sonja-Verena Albers; Steve D Bell; Fabian Blombach; Arnulf Kletzin; Nikos Kyrpides; Christa Lanz; André Plagens; Markus Rampp; Andrea Rosinus; Mathias von Jan; Kira S Makarova; Hans-Peter Klenk; Stephan C Schuster; Reinhard Hensel
Journal:  PLoS One       Date:  2011-10-07       Impact factor: 3.240

9.  "Hot standards" for the thermoacidophilic archaeon Sulfolobus solfataricus.

Authors:  Melanie Zaparty; Dominik Esser; Susanne Gertig; Patrick Haferkamp; Theresa Kouril; Andrea Manica; Trong K Pham; Julia Reimann; Kerstin Schreiber; Pawel Sierocinski; Daniela Teichmann; Marleen van Wolferen; Mathias von Jan; Patricia Wieloch; Sonja V Albers; Arnold J M Driessen; Hans-Peter Klenk; Christa Schleper; Dietmar Schomburg; John van der Oost; Phillip C Wright; Bettina Siebers
Journal:  Extremophiles       Date:  2009-10-04       Impact factor: 2.395

10.  The temperature dependent proteomic analysis of Thermotoga maritima.

Authors:  Zhuowei Wang; Wei Tong; Quanhui Wang; Xue Bai; Zhen Chen; Jingjing Zhao; Ningzhi Xu; Siqi Liu
Journal:  PLoS One       Date:  2012-10-05       Impact factor: 3.240
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