Literature DB >> 11222267

PrimeArray: genome-scale primer design for DNA-microarray construction.

G Raddatz1, M Dehio, T F Meyer, C Dehio.   

Abstract

PrimeArray is a Windows program that computes oligonuceotide primer pairs for genome-scale gene amplification by the Polymerase Chain Reaction (PCR). The program supports the automated extraction of coding sequences (CDS) from various input-file formats and allows highly automated primer pair-optimization.

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Substances：

Year:  2001        PMID： 11222267     DOI： 10.1093/bioinformatics/17.1.98

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  21 in total

1.  GST-PRIME: a genome-wide primer design software for the generation of gene sequence tags.

Authors:  C Varotto; E Richly; F Salamini; D Leister
Journal:  Nucleic Acids Res       Date:  2001-11-01       Impact factor: 16.971

2.  Primer Design Assistant (PDA): A web-based primer design tool.

Authors:  S H Chen; C Y Lin; C S Cho; C Z Lo; C A Hsiung
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

3.  Genome-scale design of PCR primers and long oligomers for DNA microarrays.

Authors:  Stefan A Haas; Marc Hild; Anthony P H Wright; Torsten Hain; Driss Talibi; Martin Vingron
Journal:  Nucleic Acids Res       Date:  2003-10-01       Impact factor: 16.971

Review 4.  DNA microarrays--techniques and applications in microbial systems.

Authors:  T Majtán; G Bukovská; J Timko
Journal:  Folia Microbiol (Praha)       Date:  2004       Impact factor: 2.099

5.  Quantitative PCR on 5 genes reliably identifies CTCL patients with 5% to 99% circulating tumor cells with 90% accuracy.

Authors:  Michael Nebozhyn; Andrey Loboda; Laszlo Kari; Alain H Rook; Eric C Vonderheid; Stuart Lessin; Carole Berger; Richard Edelson; Calen Nichols; Malik Yousef; Lalitha Gudipati; Meiling Shang; Michael K Showe; Louise C Showe
Journal:  Blood       Date:  2006-01-10       Impact factor: 22.113

6.  DNA microarray analysis of central carbohydrate metabolism: glycolytic/gluconeogenic carbon switch in the hyperthermophilic crenarchaeum Thermoproteus tenax.

Authors:  Melanie Zaparty; Alexander Zaigler; Claudia Stamme; Jörg Soppa; Reinhard Hensel; Bettina Siebers
Journal:  J Bacteriol       Date:  2008-01-04       Impact factor: 3.490

7.  Robust sequence selection method used to develop the FluChip diagnostic microarray for influenza virus.

Authors:  Martin Mehlmann; Erica D Dawson; Michael B Townsend; James A Smagala; Chad L Moore; Catherine B Smith; Nancy J Cox; Robert D Kuchta; Kathy L Rowlen
Journal:  J Clin Microbiol       Date:  2006-08       Impact factor: 5.948

8.  Characterization of the genome composition of Bartonella koehlerae by microarray comparative genomic hybridization profiling.

Authors:  Hillevi L Lindroos; Alex Mira; Dirk Repsilber; Olga Vinnere; Kristina Näslund; Michaela Dehio; Christoph Dehio; Siv G E Andersson
Journal:  J Bacteriol       Date:  2005-09       Impact factor: 3.490

9.  A bacterial artificial chromosome-based genetic linkage map of the nematode Pristionchus pacificus.

Authors:  Jagan Srinivasan; Waltraud Sinz; Christa Lanz; Alexandra Brand; Ramkumar Nandakumar; Günter Raddatz; Hanh Witte; Heike Keller; Isabel Kipping; André Pires-daSilva; Taco Jesse; Jun Millare; Michiel de Both; Stephan C Schuster; Ralf J Sommer
Journal:  Genetics       Date:  2002-09       Impact factor: 4.562

10.  Listeria monocytogenes sigma B regulates stress response and virulence functions.

Authors:  Mark J Kazmierczak; Sharon C Mithoe; Kathryn J Boor; Martin Wiedmann
Journal:  J Bacteriol       Date:  2003-10       Impact factor: 3.490
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