Literature DB >> 18162249

Nucleic acid amplification tests for detection of respiratory viruses.

Julie D Fox1.   

Abstract

Nucleic acid amplification tests (NATs) are increasingly being used for diagnosis of respiratory virus infections. The most familiar formats use DNA or RNA target amplification methods for enhanced sensitivity above culture and antigen-based procedures. Although gel and plate-hybridisation methods are still utilised for analysis of amplified products, detection using "real-time" methods which do not require handling of amplified products are favoured in many laboratories. Assays based on nucleic acid amplification and detection can be designed against a broad range of respiratory viruses and have been particularly useful for detection of recently identified viruses such as human metapneumovirus and coronaviruses NL63 and HKU1. However, the wide range of potential pathogens which can cause similar respiratory symptomology and disease makes application of individual diagnostic assays based on detection of DNA and RNA both complex and expensive. One way to resolve this potential problem is to undertake multiplexed nucleic acid amplification reactions with analysis of amplified products by suspension microarray. The Respiratory Virus Panel (RVP) from Luminex Molecular Diagnostics is one example of such an approach which could be made available to diagnostic and public health laboratories for broad spectrum respiratory virus detection.

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Year:  2007        PMID: 18162249      PMCID: PMC7128542          DOI: 10.1016/S1386-6532(07)70005-7

Source DB:  PubMed          Journal:  J Clin Virol        ISSN: 1386-6532            Impact factor:   3.168


  63 in total

1.  Coronavirus HKU1 and other coronavirus infections in Hong Kong.

Authors:  Susanna K P Lau; Patrick C Y Woo; Cyril C Y Yip; Herman Tse; Hoi-wah Tsoi; Vincent C C Cheng; Paul Lee; Bone S F Tang; Chris H Y Cheung; Rodney A Lee; Lok-yee So; Yu-lung Lau; Kwok-hung Chan; Kwok-yung Yuen
Journal:  J Clin Microbiol       Date:  2006-06       Impact factor: 5.948

2.  Detection of rhinoviruses by tissue culture and two independent amplification techniques, nucleic acid sequence-based amplification and reverse transcription-PCR, in children with acute respiratory infections during a winter season.

Authors:  K Loens; H Goossens; C de Laat; H Foolen; P Oudshoorn; S Pattyn; P Sillekens; M Ieven
Journal:  J Clin Microbiol       Date:  2006-01       Impact factor: 5.948

3.  Human coronavirus NL63 associated with lower respiratory tract symptoms in early life.

Authors:  Laurent Kaiser; Nicolas Regamey; Hanna Roiha; Christelle Deffernez; Urs Frey
Journal:  Pediatr Infect Dis J       Date:  2005-11       Impact factor: 2.129

4.  Use of the DNA flow-thru chip, a three-dimensional biochip, for typing and subtyping of influenza viruses.

Authors:  Nicole Kessler; Olivier Ferraris; Kevin Palmer; Wayne Marsh; Adam Steel
Journal:  J Clin Microbiol       Date:  2004-05       Impact factor: 5.948

5.  Human coronavirus NL63 infection and other coronavirus infections in children hospitalized with acute respiratory disease in Hong Kong, China.

Authors:  Susan S Chiu; Kwok Hung Chan; Ka Wing Chu; See Wai Kwan; Yi Guan; Leo Lit Man Poon; J S M Peiris
Journal:  Clin Infect Dis       Date:  2005-05-10       Impact factor: 9.079

6.  Life-threatening human metapneumovirus infections in West of Scotland.

Authors:  V Sivaprakasam; T C Collins; C Aitken; W F Carman
Journal:  J Clin Virol       Date:  2007-05-18       Impact factor: 3.168

7.  MassTag polymerase-chain-reaction detection of respiratory pathogens, including a new rhinovirus genotype, that caused influenza-like illness in New York State during 2004-2005.

Authors:  Daryl Lamson; Neil Renwick; Vishal Kapoor; Zhiqiang Liu; Gustavo Palacios; Jingyue Ju; Amy Dean; Kirsten St George; Thomas Briese; W Ian Lipkin
Journal:  J Infect Dis       Date:  2006-10-06       Impact factor: 5.226

8.  Simultaneous detection of fourteen respiratory viruses in clinical specimens by two multiplex reverse transcription nested-PCR assays.

Authors:  M T Coiras; J C Aguilar; M L García; I Casas; P Pérez-Breña
Journal:  J Med Virol       Date:  2004-03       Impact factor: 2.327

Review 9.  Applications of Luminex xMAP technology for rapid, high-throughput multiplexed nucleic acid detection.

Authors:  Sherry A Dunbar
Journal:  Clin Chim Acta       Date:  2005-08-15       Impact factor: 3.786

10.  Development of a PCR-and hybridization-based assay (PCR Adenovirus Consensus) for the detection and the species identification of adenoviruses in respiratory specimens.

Authors:  Astrid Vabret; Stéphanie Gouarin; Martine Joannes; Come Barranger; Joëlle Petitjean; Sandrine Corbet; Jacques Brouard; Françoise Lafay; Jean-François Duhamel; Bernard Guillois; François Freymuth
Journal:  J Clin Virol       Date:  2004-10       Impact factor: 3.168

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  42 in total

1.  Simultaneous detection of influenza A, influenza B, and respiratory syncytial viruses and subtyping of influenza A H3N2 virus and H1N1 (2009) virus by multiplex real-time PCR.

Authors:  Yu Chen; Dawei Cui; Shufa Zheng; Shigui Yang; Jia Tong; Dagan Yang; Jian Fan; Jie Zhang; Bin Lou; Xuefen Li; Xiaoling Zhuge; Bo Ye; Baode Chen; Weilin Mao; Yajun Tan; Genyun Xu; Zhenjin Chen; Nan Chen; Lanjuan Li
Journal:  J Clin Microbiol       Date:  2011-01-26       Impact factor: 5.948

2.  Monitoring viral RNA in infected cells with LNA flow-FISH.

Authors:  Kelly L Robertson; Anne Brooks Verhoeven; Dzung C Thach; Eddie L Chang
Journal:  RNA       Date:  2010-06-28       Impact factor: 4.942

3.  Enhanced viral etiological diagnosis of respiratory system infection outbreaks by use of a multitarget nucleic acid amplification assay.

Authors:  Sallene Wong; Kanti Pabbaraju; Bonita E Lee; Julie D Fox
Journal:  J Clin Microbiol       Date:  2009-10-14       Impact factor: 5.948

4.  Comparison of the Luminex xTAG respiratory viral panel with xTAG respiratory viral panel fast for diagnosis of respiratory virus infections.

Authors:  Kanti Pabbaraju; Sallene Wong; Kara L Tokaryk; Kevin Fonseca; Steven J Drews
Journal:  J Clin Microbiol       Date:  2011-03-16       Impact factor: 5.948

5.  Accurate Detection of Avian Respiratory Viruses by Use of Multiplex PCR-Based Luminex Suspension Microarray Assay.

Authors:  Nacira Laamiri; Pia Fällgren; Siamak Zohari; Jaouher Ben Ali; Abdeljelil Ghram; Mikael Leijon; Issam Hmila
Journal:  J Clin Microbiol       Date:  2016-08-24       Impact factor: 5.948

6.  Comparison of the Luminex xTAG respiratory viral panel with in-house nucleic acid amplification tests for diagnosis of respiratory virus infections.

Authors:  Kanti Pabbaraju; Kara L Tokaryk; Sallene Wong; Julie D Fox
Journal:  J Clin Microbiol       Date:  2008-07-16       Impact factor: 5.948

7.  High incidence of multiple viral infections identified in upper respiratory tract infected children under three years of age in Shanghai, China.

Authors:  Guocui Zhang; Yunwen Hu; Hongping Wang; Lu Zhang; Yixi Bao; Xiaoming Zhou
Journal:  PLoS One       Date:  2012-09-07       Impact factor: 3.240

8.  Comparison of three multiplex PCR assays for the detection of respiratory viral infections: evaluation of xTAG respiratory virus panel fast assay, RespiFinder 19 assay and RespiFinder SMART 22 assay.

Authors:  Mareike Dabisch-Ruthe; Tanja Vollmer; Ortwin Adams; Cornelius Knabbe; Jens Dreier
Journal:  BMC Infect Dis       Date:  2012-07-24       Impact factor: 3.090

9.  Multiplex primer prediction software for divergent targets.

Authors:  Shea N Gardner; Amy L Hiddessen; Peter L Williams; Christine Hara; Mark C Wagner; Bill W Colston
Journal:  Nucleic Acids Res       Date:  2009-09-16       Impact factor: 16.971

10.  Diagnostic performance of two highly multiplexed respiratory virus assays in a pediatric cohort.

Authors:  Michael S Forman; Sonali Advani; Christina Newman; Charlotte A Gaydos; Aaron M Milstone; Alexandra Valsamakis
Journal:  J Clin Virol       Date:  2012-07-24       Impact factor: 3.168

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