Literature DB >> 18157545

High-speed AFM and nano-visualization of biomolecular processes.

Toshio Ando1, Takayuki Uchihashi, Noriyuki Kodera, Daisuke Yamamoto, Atsushi Miyagi, Masaaki Taniguchi, Hayato Yamashita.   

Abstract

Conventional atomic force microscopes (AFMs) take at least 30-60 s to capture an image, while dynamic biomolecular processes occur on a millisecond timescale or less. To narrow this large difference in timescale, various studies have been carried out in the past decade. These efforts have led to a maximum imaging rate of 30-60 ms/frame for a scan range of approximately 250 nm, with a weak tip-sample interaction force being maintained. Recent imaging studies using high-speed AFM with this capacity have shown that this new microscope can provide straightforward and prompt answers to how and what structural changes progress while individual biomolecules are at work. This article first compares high-speed AFM with its competitor (single-molecule fluorescence microscopy) on various aspects and then describes high-speed AFM instrumentation and imaging studies on biomolecular processes. The article concludes by discussing the future prospects of this cutting-edge microscopy.

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Year:  2007        PMID: 18157545     DOI: 10.1007/s00424-007-0406-0

Source DB:  PubMed          Journal:  Pflugers Arch        ISSN: 0031-6768            Impact factor:   3.657


  58 in total

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Journal:  J Struct Biol       Date:  2001-08       Impact factor: 2.867

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Authors:  Stan A Burgess; Matt L Walker; Hitoshi Sakakibara; Peter J Knight; Kazuhiro Oiwa
Journal:  Nature       Date:  2003-02-13       Impact factor: 49.962

3.  Inverting dynamic force microscopy: from signals to time-resolved interaction forces.

Authors:  Martin Stark; Robert W Stark; Wolfgang M Heckl; Reinhard Guckenberger
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-17       Impact factor: 11.205

Review 4.  Single-molecule visualization in cell biology.

Authors:  Yasushi Sako; Toshio Yanagida
Journal:  Nat Rev Mol Cell Biol       Date:  2003-09       Impact factor: 94.444

5.  Single-molecule recognition imaging microscopy.

Authors:  C Stroh; H Wang; R Bash; B Ashcroft; J Nelson; H Gruber; D Lohr; S M Lindsay; P Hinterdorfer
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-16       Impact factor: 11.205

6.  Differential labeling of myosin V heads with quantum dots allows direct visualization of hand-over-hand processivity.

Authors:  David M Warshaw; Guy G Kennedy; Steven S Work; Elena B Krementsova; Samantha Beck; Kathleen M Trybus
Journal:  Biophys J       Date:  2005-03-11       Impact factor: 4.033

7.  Macromolecular-scale resolution in biological fluorescence microscopy.

Authors:  Gerald Donnert; Jan Keller; Rebecca Medda; M Alexandra Andrei; Silvio O Rizzoli; Reinhard Lührmann; Reinhard Jahn; Christian Eggeling; Stefan W Hell
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-24       Impact factor: 11.205

8.  Fast-scanning atomic force microscopy reveals the molecular mechanism of DNA cleavage by ApaI endonuclease.

Authors:  M Yokokawa; S H Yoshimura; Y Naito; T Ando; A Yagi; N Sakai; K Takeyasu
Journal:  IEE Proc Nanobiotechnol       Date:  2006-08

Review 9.  Supported membranes: scientific and practical applications.

Authors:  E Sackmann
Journal:  Science       Date:  1996-01-05       Impact factor: 47.728

10.  Symmetric complexes of GroE chaperonins as part of the functional cycle.

Authors:  M Schmidt; K Rutkat; R Rachel; G Pfeifer; R Jaenicke; P Viitanen; G Lorimer; J Buchner
Journal:  Science       Date:  1994-07-29       Impact factor: 47.728

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  28 in total

1.  Guide to video recording of structure dynamics and dynamic processes of proteins by high-speed atomic force microscopy.

Authors:  Takayuki Uchihashi; Noriyuki Kodera; Toshio Ando
Journal:  Nat Protoc       Date:  2012-05-24       Impact factor: 13.491

Review 2.  Molecular imaging of membrane proteins and microfilaments using atomic force microscopy.

Authors:  Se-Hui Jung; Donghyun Park; Jae Hyo Park; Young-Myeong Kim; Kwon-Soo Ha
Journal:  Exp Mol Med       Date:  2010-09-30       Impact factor: 8.718

Review 3.  New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?

Authors:  Karolin Luger; Mekonnen L Dechassa; David J Tremethick
Journal:  Nat Rev Mol Cell Biol       Date:  2012-06-22       Impact factor: 94.444

Review 4.  Atomic force microscopy of biological membranes.

Authors:  Patrick L T M Frederix; Patrick D Bosshart; Andreas Engel
Journal:  Biophys J       Date:  2009-01       Impact factor: 4.033

5.  Athermalization in atomic force microscope based force spectroscopy using matched microstructure coupling.

Authors:  H Torun; O Finkler; F L Degertekin
Journal:  Rev Sci Instrum       Date:  2009-07       Impact factor: 1.523

6.  Contact-mode high-resolution high-speed atomic force microscopy movies of the purple membrane.

Authors:  Ignacio Casuso; Noriyuki Kodera; Christian Le Grimellec; Toshio Ando; Simon Scheuring
Journal:  Biophys J       Date:  2009-09-02       Impact factor: 4.033

7.  Influence of lever structure on myosin 5a walking.

Authors:  Olusola A Oke; Stan A Burgess; Eva Forgacs; Peter J Knight; Takeshi Sakamoto; James R Sellers; Howard White; John Trinick
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-25       Impact factor: 11.205

8.  AAA+ chaperone ClpX regulates dynamics of prokaryotic cytoskeletal protein FtsZ.

Authors:  Shinya Sugimoto; Kunitoshi Yamanaka; Shingo Nishikori; Atsushi Miyagi; Toshio Ando; Teru Ogura
Journal:  J Biol Chem       Date:  2009-12-17       Impact factor: 5.157

9.  Ordered arrays of native chromatin molecules for high-resolution imaging and analysis.

Authors:  Aline Cerf; Harvey C Tian; Harold G Craighead
Journal:  ACS Nano       Date:  2012-08-01       Impact factor: 15.881

10.  Deciphering the structure, growth and assembly of amyloid-like fibrils using high-speed atomic force microscopy.

Authors:  Pierre-Emmanuel Milhiet; Daisuke Yamamoto; Olivia Berthoumieu; Patrice Dosset; Christian Le Grimellec; Jean-Michel Verdier; Stéphane Marchal; Toshio Ando
Journal:  PLoS One       Date:  2010-10-08       Impact factor: 3.240

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