Literature DB >> 18157137

GraFix: sample preparation for single-particle electron cryomicroscopy.

Berthold Kastner1, Niels Fischer, Monika Mariola Golas, Bjoern Sander, Prakash Dube, Daniel Boehringer, Klaus Hartmuth, Jochen Deckert, Florian Hauer, Elmar Wolf, Hannes Uchtenhagen, Henning Urlaub, Franz Herzog, Jan Michael Peters, Dietmar Poerschke, Reinhard Lührmann, Holger Stark.   

Abstract

We developed a method, named GraFix, that considerably improves sample quality for structure determination by single-particle electron cryomicroscopy (cryo-EM). GraFix uses a glycerol gradient centrifugation step in which the complexes are centrifuged into an increasing concentration of a chemical fixation reagent to prevent aggregation and to stabilize individual macromolecules. The method can be used to prepare samples for negative-stain, cryo-negative-stain and, particularly, unstained cryo-EM.

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Year:  2007        PMID: 18157137     DOI: 10.1038/nmeth1139

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  215 in total

1.  Subunit architecture of general transcription factor TFIIH.

Authors:  Brian J Gibbons; Edward J Brignole; Maia Azubel; Kenji Murakami; Neil R Voss; David A Bushnell; Francisco J Asturias; Roger D Kornberg
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-20       Impact factor: 11.205

2.  Molecular architecture of the multisubunit homotypic fusion and vacuole protein sorting (HOPS) tethering complex.

Authors:  Cornelia Bröcker; Anne Kuhlee; Christos Gatsogiannis; Henning J kleine Balderhaar; Carina Hönscher; Siegfried Engelbrecht-Vandré; Christian Ungermann; Stefan Raunser
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-25       Impact factor: 11.205

3.  Large multimeric assemblies of nucleosome assembly protein and histones revealed by small-angle X-ray scattering and electron microscopy.

Authors:  Emily R Newman; G Geoff Kneale; Raimond B G Ravelli; Manikandan Karuppasamy; Fatemeh Karimi Nejadasl; Ian A Taylor; John E McGeehan
Journal:  J Biol Chem       Date:  2012-06-15       Impact factor: 5.157

4.  Mus81-Mms4 functions as a single heterodimer to cleave nicked intermediates in recombinational DNA repair.

Authors:  Erin K Schwartz; William D Wright; Kirk T Ehmsen; James E Evans; Henning Stahlberg; Wolf-Dietrich Heyer
Journal:  Mol Cell Biol       Date:  2012-05-29       Impact factor: 4.272

5.  Antisense-targeted immuno-EM localization of the pre-mRNA path in the spliceosomal C complex.

Authors:  Elmar Wolf; Berthold Kastner; Reinhard Lührmann
Journal:  RNA       Date:  2012-05-24       Impact factor: 4.942

6.  Merging molecular electron microscopy and mass spectrometry by carbon film-assisted endoproteinase digestion.

Authors:  Florian M Richter; Bjoern Sander; Monika M Golas; Holger Stark; Henning Urlaub
Journal:  Mol Cell Proteomics       Date:  2010-06-08       Impact factor: 5.911

7.  Single-particle cryoelectron microscopy analysis reveals the HIV-1 spike as a tripod structure.

Authors:  Shang-Rung Wu; Robin Löving; Birgitta Lindqvist; Hans Hebert; Philip J B Koeck; Mathilda Sjöberg; Henrik Garoff
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-18       Impact factor: 11.205

8.  Protein localisation by electron microscopy reveals the architecture of the yeast spliceosomal B complex.

Authors:  Norbert Rigo; Chengfu Sun; Patrizia Fabrizio; Berthold Kastner; Reinhard Lührmann
Journal:  EMBO J       Date:  2015-11-18       Impact factor: 11.598

9.  Purification of a Crenarchaeal ATP Synthase in the Light of the Unique Bioenergetics of Ignicoccus Species.

Authors:  Lydia J Kreuter; Andrea Weinfurtner; Alexander Ziegler; Julia Weigl; Jan Hoffmann; Nina Morgner; Volker Müller; Harald Huber
Journal:  J Bacteriol       Date:  2019-03-13       Impact factor: 3.490

10.  Averaging of electron subtomograms and random conical tilt reconstructions through likelihood optimization.

Authors:  Sjors H W Scheres; Roberto Melero; Mikel Valle; Jose-Maria Carazo
Journal:  Structure       Date:  2009-12-09       Impact factor: 5.006

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