Literature DB >> 18093993

An adaptive mutation in adenylate kinase that increases organismal fitness is linked to stability-activity trade-offs.

Rafael Couñago1, Corey J Wilson, Matthew I Peña, Pernilla Wittung-Stafshede, Yousif Shamoo.   

Abstract

Protein function is a balance between activity and stability. However, the relevance of stability-activity trade-offs for protein evolution and their impact on organismal fitness have been difficult to determine. Previously, we have linked organismal survival at increasing temperatures to adaptive changes to a single protein sequence through allelic replacement of an essential gene, adenylate kinase (adk), in a thermophile. In vivo continuous evolution of the temperature-sensitive thermophile has shown that the first step toward increased organismal fitness is mutation of glutamine-199 to arginine in the mesophilic enzyme (AKsub Q199R). Here, we show that although substitution of Arg-199 did confer a modest increase in stability (0.6 kcal mol(-1)at 20 degrees C; DeltaT(m) = 3.0 degrees C), it is a large change in the activity profile of the enzyme that is responsible for its exceptional robustness during the earlier experimental evolution study. Kinetic studies of AKsub Q199R show that it has a strong loss of enzymatic activity (>50%) at lower temperatures (20-45 degrees C) and a subsequent increase at elevated temperatures. The stability-activity trade-off observed for AKsub Q199R was linked to the rigidification of the overall structure through stabilization of a polypeptide loop containing Arg-199 that is part of the ATP-binding site of the enzyme. Structural analysis revealed the formation of new ionic interactions facilitated by Arg-199. Our results suggest that stability-activity trade-offs are employed readily as an evolutionary strategy during natural selection to increase organismal fitness.

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Year:  2007        PMID: 18093993     DOI: 10.1093/protein/gzm072

Source DB:  PubMed          Journal:  Protein Eng Des Sel        ISSN: 1741-0126            Impact factor:   1.650


  16 in total

1.  Experimental evolution of adenylate kinase reveals contrasting strategies toward protein thermostability.

Authors:  Corwin Miller; Milya Davlieva; Corey Wilson; Kristopher I White; Rafael Couñago; Gang Wu; Jeffrey C Myers; Pernilla Wittung-Stafshede; Yousif Shamoo
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

2.  Evolution of a single gene highlights the complexity underlying molecular descriptions of fitness.

Authors:  Matthew I Peña; Elizabeth Van Itallie; Matthew R Bennett; Yousif Shamoo
Journal:  Chaos       Date:  2010-06       Impact factor: 3.642

3.  Functional and metabolic effects of adaptive glycerol kinase (GLPK) mutants in Escherichia coli.

Authors:  M Kenyon Applebee; Andrew R Joyce; Tom M Conrad; Donald W Pettigrew; Bernhard Ø Palsson
Journal:  J Biol Chem       Date:  2011-05-06       Impact factor: 5.157

4.  Fuzzy oil drop model to interpret the structure of antifreeze proteins and their mutants.

Authors:  Mateusz Banach; Katarzyna Prymula; Wiktor Jurkowski; Leszek Konieczny; Irena Roterman
Journal:  J Mol Model       Date:  2011-04-27       Impact factor: 1.810

Review 5.  Using Evolution to Guide Protein Engineering: The Devil IS in the Details.

Authors:  Liskin Swint-Kruse
Journal:  Biophys J       Date:  2016-07-12       Impact factor: 4.033

Review 6.  Protein folding in the cell: challenges and progress.

Authors:  Anne Gershenson; Lila M Gierasch
Journal:  Curr Opin Struct Biol       Date:  2010-11-26       Impact factor: 6.809

7.  Evolutionary fates within a microbial population highlight an essential role for protein folding during natural selection.

Authors:  Matthew I Peña; Milya Davlieva; Matthew R Bennett; John S Olson; Yousif Shamoo
Journal:  Mol Syst Biol       Date:  2010-07-13       Impact factor: 11.429

Review 8.  Evolutionary biochemistry: revealing the historical and physical causes of protein properties.

Authors:  Michael J Harms; Joseph W Thornton
Journal:  Nat Rev Genet       Date:  2013-08       Impact factor: 53.242

9.  Structure and biochemical characterization of an adenylate kinase originating from the psychrophilic organism Marinibacillus marinus.

Authors:  Milya Davlieva; Yousif Shamoo
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-07-21

10.  SDM--a server for predicting effects of mutations on protein stability and malfunction.

Authors:  Catherine L Worth; Robert Preissner; Tom L Blundell
Journal:  Nucleic Acids Res       Date:  2011-05-18       Impact factor: 16.971

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