Literature DB >> 19652331

Structure and biochemical characterization of an adenylate kinase originating from the psychrophilic organism Marinibacillus marinus.

Milya Davlieva1, Yousif Shamoo.   

Abstract

Adenylate kinases (AKs; EC 2.7.4.3) are essential members of the NMP kinase family that maintain cellular homeostasis by the interconversion of AMP, ADP and ATP. AKs play a critical role in adenylate homeostasis across all domains of life and have been used extensively as prototypes for the study of protein adaptation and the relationship of protein dynamics and stability to function. To date, kinetic studies of psychrophilic AKs have not been performed. In order to broaden understanding of extremophilic adaptation, the kinetic parameters of adenylate kinase from the psychrophile Marinibacillus marinus were examined and the crystal structure of this cold-adapted enzyme was determined at 2.0 A resolution. As expected, the overall structure and topology of the psychrophilic M. marinus AK are similar to those of mesophilic and thermophilic AKs. The thermal denaturation midpoint of M. marinus AK (321.1 K) is much closer to that of the mesophile Bacillus subtilis (320.7 K) than the more closely related psychrophile B. globisporus (316.4 K). In addition, the enzymatic properties of M. marinus AK are quite close to those of the mesophilic AK and suggests that M. marinus experiences temperature ranges in which excellent enzyme function over a broad temperature range (293-313 K) has been retained for the success of the organism. Even transient loss of AK function is lethal and as a consequence AK must be robust and be well adapted to the environment of the host organism.

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Year:  2009        PMID: 19652331      PMCID: PMC2720325          DOI: 10.1107/S1744309109024348

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  38 in total

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5.  Single molecule conformational dynamics of adenylate kinase: energy landscape, structural correlations, and transition state ensembles.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

7.  Analysis of zinc binding sites in protein crystal structures.

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8.  Jeotgalibacillus alimentarius gen. nov., sp. nov., a novel bacterium isolated from jeotgal with L-lysine in the cell wall, and reclassification of Bacillus marinus Rüger 1983 . as mMrinibacillus marinus gen nov., comb. nov.

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9.  Crystal structures of Bacillus stearothermophilus adenylate kinase with bound Ap5A, Mg2+ Ap5A, and Mn2+ Ap5A reveal an intermediate lid position and six coordinate octahedral geometry for bound Mg2+ and Mn2+.

Authors:  M B Berry; G N Phillips
Journal:  Proteins       Date:  1998-08-15

10.  Large-scale allosteric conformational transitions of adenylate kinase appear to involve a population-shift mechanism.

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  8 in total

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Journal:  ACS Synth Biol       Date:  2016-03-25       Impact factor: 5.110

2.  Mapping the Dynamics Landscape of Conformational Transitions in Enzyme: The Adenylate Kinase Case.

Authors:  Dechang Li; Ming S Liu; Baohua Ji
Journal:  Biophys J       Date:  2015-08-04       Impact factor: 4.033

3.  Function and biotechnology of extremophilic enzymes in low water activity.

Authors:  Ram Karan; Melinda D Capes; Shiladitya Dassarma
Journal:  Aquat Biosyst       Date:  2012-02-02

4.  Adenylate kinase from Streptococcus pneumoniae is essential for growth through its catalytic activity.

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Journal:  FEBS Open Bio       Date:  2014-07-08       Impact factor: 2.693

Review 5.  Discovery, Molecular Mechanisms, and Industrial Applications of Cold-Active Enzymes.

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6.  Draft Genome Sequence of Sporosarcina globispora W 25T (DSM 4), a Psychrophilic Bacterium Isolated from Soil and River Water.

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7.  Psychrophily and catalysis.

Authors:  Charles Gerday
Journal:  Biology (Basel)       Date:  2013-04-16

Review 8.  Psychrophilic enzymes: from folding to function and biotechnology.

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Journal:  Scientifica (Cairo)       Date:  2013-01-17
  8 in total

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