Literature DB >> 18084100

Preliminary neutron and ultrahigh-resolution X-ray diffraction studies of the aspartic proteinase endothiapepsin cocrystallized with a gem-diol inhibitor.

Han-Fang Tuan1, Peter Erskine, Paul Langan, Jon Cooper, Leighton Coates.   

Abstract

Endothiapepsin has been cocrystallized with the gem-diol inhibitor PD-135,040 in a low solvent-content (39%) unit cell, which is unprecedented for this enzyme-inhibitor complex and enables ultrahigh-resolution (1.0 A) X-ray diffraction data to be collected. This atomic resolution X-ray data set will be used to deduce the protonation states of the catalytic aspartate residues. A room-temperature neutron data set has also been collected for joint refinement with a room-temperature X-ray data set in order to locate the H/D atoms at the active site.

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Year:  2007        PMID: 18084100      PMCID: PMC2344097          DOI: 10.1107/S1744309107061283

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  14 in total

1.  Rearrangement of Cruickshank's formulae for the diffraction-component precision index.

Authors:  D M Blow
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-04-26

2.  The CCP4 suite: programs for protein crystallography.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

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4.  A neutron Laue diffraction study of endothiapepsin: implications for the aspartic proteinase mechanism.

Authors:  L Coates; P T Erskine; S P Wood; D A Myles; J B Cooper
Journal:  Biochemistry       Date:  2001-11-06       Impact factor: 3.162

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Authors:  T Hofmann; A L Fink; B M Dunn
Journal:  Biochemistry       Date:  1984-10-23       Impact factor: 3.162

6.  Binding of a reduced peptide inhibitor to the aspartic proteinase from Rhizopus chinensis: implications for a mechanism of action.

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Journal:  Proc Natl Acad Sci U S A       Date:  1987-10       Impact factor: 11.205

7.  X-ray analyses of aspartic proteinases. The three-dimensional structure at 2.1 A resolution of endothiapepsin.

Authors:  T L Blundell; J A Jenkins; B T Sewell; L H Pearl; J B Cooper; I J Tickle; B Veerapandian; S P Wood
Journal:  J Mol Biol       Date:  1990-02-20       Impact factor: 5.469

8.  Direct observation by X-ray analysis of the tetrahedral "intermediate" of aspartic proteinases.

Authors:  B Veerapandian; J B Cooper; A Sali; T L Blundell; R L Rosati; B W Dominy; D B Damon; D J Hoover
Journal:  Protein Sci       Date:  1992-03       Impact factor: 6.725

9.  Five atomic resolution structures of endothiapepsin inhibitor complexes: implications for the aspartic proteinase mechanism.

Authors:  L Coates; P T Erskine; M P Crump; S P Wood; J B Cooper
Journal:  J Mol Biol       Date:  2002-05-17       Impact factor: 5.469

10.  X-ray-crystallographic studies of complexes of pepstatin A and a statine-containing human renin inhibitor with endothiapepsin.

Authors:  D Bailey; J B Cooper; B Veerapandian; T L Blundell; B Atrash; D M Jones; M Szelke
Journal:  Biochem J       Date:  1993-01-15       Impact factor: 3.857

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  8 in total

1.  Preliminary neutron and X-ray crystallographic studies of equine cyanomethemoglobin.

Authors:  A Y Kovalevsky; S Zoe Fisher; Sean Seaver; Marat Mustyakimov; Narayanasami Sukumar; Paul Langan; Timothy C Mueser; B Leif Hanson
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-03-31

2.  Hemoglobin redux: combining neutron and X-ray diffraction with mass spectrometry to analyse the quaternary state of oxidized hemoglobins.

Authors:  Timothy C Mueser; Wendell P Griffith; Andrey Y Kovalevsky; Jingshu Guo; Sean Seaver; Paul Langan; B Leif Hanson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-10-20

3.  Macromolecular neutron crystallography at the Protein Crystallography Station (PCS).

Authors:  Andrey Kovalevsky; Zoe Fisher; Hannah Johnson; Marat Mustyakimov; Mary Jo Waltman; Paul Langan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-10-20

4.  The catalytic mechanism of an aspartic proteinase explored with neutron and X-ray diffraction.

Authors:  Leighton Coates; Han-Fang Tuan; Stephen Tomanicek; Andrey Kovalevsky; Marat Mustyakimov; Peter Erskine; Jon Cooper
Journal:  J Am Chem Soc       Date:  2008-05-15       Impact factor: 15.419

5.  Engineering an improved crystal contact across a solvent-mediated interface of human fibroblast growth factor 1.

Authors:  Akshaya K Meher; Sachiko I Blaber; Jihun Lee; Ejiro Honjo; Ryota Kuroki; Michael Blaber
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-10-30

Review 6.  Neutron crystallography: opportunities, challenges, and limitations.

Authors:  Matthew P Blakeley; Paul Langan; Nobuo Niimura; Alberto Podjarny
Journal:  Curr Opin Struct Biol       Date:  2008-08-07       Impact factor: 6.809

7.  Preliminary time-of-flight neutron diffraction study of human deoxyhemoglobin.

Authors:  A Y Kovalevsky; T Chatake; N Shibayama; S-Y Park; T Ishikawa; M Mustyakimov; S Z Fisher; P Langan; Y Morimoto
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-03-21

8.  Protein structures by spallation neutron crystallography.

Authors:  Paul Langan; Zoë Fisher; Andrii Kovalevsky; Marat Mustyakimov; Amanda Sutcliffe Valone; Cliff Unkefer; Mary Jo Waltman; Leighton Coates; Paul D Adams; Pavel V Afonine; Brad Bennett; Chris Dealwis; Benno P Schoenborn
Journal:  J Synchrotron Radiat       Date:  2008-04-18       Impact factor: 2.616

  8 in total

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