Literature DB >> 18083885

Rapid DNA library construction for functional genomic and metagenomic screening.

Jonathan E Schmitz1, Anu Daniel, Mattias Collin, Raymond Schuch, Vincent A Fischetti.   

Abstract

A rapid protocol was developed for constructing plasmid libraries from small quantities of genomic/metagenomic DNA. The technique utilizes linker amplification with topoisomerase cloning and allows for inducible transcription in Escherichia coli. As proof of principle, several anti-Bacillus lysins were cloned from bacteriophage genomes and an aerolysin was cloned from a metagenomic sample.

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Year:  2007        PMID： 18083885      PMCID： PMC2258639          DOI： 10.1128/AEM.01864-07

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  18 in total

Review 1.  Metagenomics: DNA sequencing of environmental samples.

Authors:  Susannah Green Tringe; Edward M Rubin
Journal:  Nat Rev Genet       Date:  2005-11       Impact factor: 53.242

Review 2.  Mining genomes and 'metagenomes' for novel catalysts.

Authors:  Manuel Ferrer; Francisco Martínez-Abarca; Peter N Golyshin
Journal:  Curr Opin Biotechnol       Date:  2005-09-19       Impact factor: 9.740

Review 3.  Viral metagenomics.

Authors:  Robert A Edwards; Forest Rohwer
Journal:  Nat Rev Microbiol       Date:  2005-06       Impact factor: 60.633

Review 4.  Capturing the uncultivated majority.

Authors:  Brian D Green; Martin Keller
Journal:  Curr Opin Biotechnol       Date:  2006-05-15       Impact factor: 9.740

5.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

Review 6.  Bacteriophage endolysins as a novel class of antibacterial agents.

Authors:  Jan Borysowski; Beata Weber-Dabrowska; Andrzej Górski
Journal:  Exp Biol Med (Maywood)       Date:  2006-04

7.  The 1.6 A crystal structure of the catalytic domain of PlyB, a bacteriophage lysin active against Bacillus anthracis.

Authors:  Corrine J Porter; Raymond Schuch; Adam J Pelzek; Ashley M Buckle; Sheena McGowan; Matthew C J Wilce; Jamie Rossjohn; Ryann Russell; Daniel Nelson; Vincent A Fischetti; James C Whisstock
Journal:  J Mol Biol       Date:  2006-11-18       Impact factor: 5.469

8.  The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.

Authors:  Shibu Yooseph; Granger Sutton; Douglas B Rusch; Aaron L Halpern; Shannon J Williamson; Karin Remington; Jonathan A Eisen; Karla B Heidelberg; Gerard Manning; Weizhong Li; Lukasz Jaroszewski; Piotr Cieplak; Christopher S Miller; Huiying Li; Susan T Mashiyama; Marcin P Joachimiak; Christopher van Belle; John-Marc Chandonia; David A Soergel; Yufeng Zhai; Kannan Natarajan; Shaun Lee; Benjamin J Raphael; Vineet Bafna; Robert Friedman; Steven E Brenner; Adam Godzik; David Eisenberg; Jack E Dixon; Susan S Taylor; Robert L Strausberg; Marvin Frazier; J Craig Venter
Journal:  PLoS Biol       Date:  2007-03       Impact factor: 8.029

Review 9.  Bacteriophage lytic enzymes: novel anti-infectives.

Authors:  Vincent A Fischetti
Journal:  Trends Microbiol       Date:  2005-10       Impact factor: 17.079

Review 10.  Viral metagenomics.

Authors:  Eric L Delwart
Journal:  Rev Med Virol       Date:  2007 Mar-Apr       Impact factor: 6.989
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  10 in total

1.  Prevalence of Bacillus anthracis-like organisms and bacteriophages in the intestinal tract of the earthworm Eisenia fetida.

Authors:  R Schuch; A J Pelzek; S Kan; V A Fischetti
Journal:  Appl Environ Microbiol       Date:  2010-01-29       Impact factor: 4.792

Review 2.  Recent application of metagenomic approaches toward the discovery of antimicrobials and other bioactive small molecules.

Authors:  Jacob J Banik; Sean F Brady
Journal:  Curr Opin Microbiol       Date:  2010-09-29       Impact factor: 7.934

3.  Identifying active phage lysins through functional viral metagenomics.

Authors:  Jonathan E Schmitz; Raymond Schuch; Vincent A Fischetti
Journal:  Appl Environ Microbiol       Date:  2010-09-17       Impact factor: 4.792

4.  Novel phage lysin capable of killing the multidrug-resistant gram-negative bacterium Acinetobacter baumannii in a mouse bacteremia model.

Authors:  Rolf Lood; Benjamin Y Winer; Adam J Pelzek; Roberto Diez-Martinez; Mya Thandar; Chad W Euler; Raymond Schuch; Vincent A Fischetti
Journal:  Antimicrob Agents Chemother       Date:  2015-01-20       Impact factor: 5.191

5.  Isolation and characterization of metalloproteases with a novel domain structure by construction and screening of metagenomic libraries.

Authors:  Tanja Waschkowitz; Stephanie Rockstroh; Rolf Daniel
Journal:  Appl Environ Microbiol       Date:  2009-02-13       Impact factor: 4.792

6.  Advancing full length genome sequencing for human RNA viral pathogens.

Authors:  Appolinaire Djikeng; David Spiro
Journal:  Future Virol       Date:  2009-01       Impact factor: 1.831

7.  Exploiting what phage have evolved to control gram-positive pathogens.

Authors:  Vincent A Fischetti
Journal:  Bacteriophage       Date:  2011-07-01

8.  Development of Phage Lysins as Novel Therapeutics: A Historical Perspective.

Authors:  Vincent A Fischetti
Journal:  Viruses       Date:  2018-06-07       Impact factor: 5.048

9.  The secret life of the anthrax agent Bacillus anthracis: bacteriophage-mediated ecological adaptations.

Authors:  Raymond Schuch; Vincent A Fischetti
Journal:  PLoS One       Date:  2009-08-12       Impact factor: 3.240

10.  Development of an Assay for the Identification of Receptor Binding Proteins from Bacteriophages.

Authors:  David J Simpson; Jessica C Sacher; Christine M Szymanski
Journal:  Viruses       Date:  2016-01-11       Impact factor: 5.048
  10 in total

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