Literature DB >> 16171989

Mining genomes and 'metagenomes' for novel catalysts.

Manuel Ferrer1, Francisco Martínez-Abarca, Peter N Golyshin.   

Abstract

Advances in the field of genomics and 'metagenomics' have dramatically revised our view of microbial biodiversity and its potential for biotechnological applications. Considering the estimation that >99% of microorganisms in most environments are not amenable to culturing, very little is known about their genomes, genes and encoded enzymatic activities. The isolation, archiving and analysis of environmental DNA (or so-called 'metagenomes') has enabled us to mine microbial diversity, allowing us to access their genomes, identify protein coding sequences and even to reconstruct biochemical pathways, providing insights into the properties and functions of these organisms. The generation and analysis of (meta)genomic libraries is thus a powerful approach to harvest and archive environmental genetic resources. It will enable us to identify which organisms are present, what they do, and how their genetic information can be beneficial to mankind.

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Year:  2005        PMID: 16171989     DOI: 10.1016/j.copbio.2005.09.001

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  31 in total

1.  Prospecting metagenomic enzyme subfamily genes for DNA family shuffling by a novel PCR-based approach.

Authors:  Qiuyan Wang; Huili Wu; Anming Wang; Pengfei Du; Xiaolin Pei; Haifeng Li; Xiaopu Yin; Lifeng Huang; Xiaolong Xiong
Journal:  J Biol Chem       Date:  2010-10-20       Impact factor: 5.157

2.  Rapid DNA library construction for functional genomic and metagenomic screening.

Authors:  Jonathan E Schmitz; Anu Daniel; Mattias Collin; Raymond Schuch; Vincent A Fischetti
Journal:  Appl Environ Microbiol       Date:  2007-12-14       Impact factor: 4.792

Review 3.  Contributions of microorganisms to industrial biology.

Authors:  Arnold L Demain; Jose L Adrio
Journal:  Mol Biotechnol       Date:  2008-01       Impact factor: 2.695

4.  High-throughput selection for cellulase catalysts using chemical complementation.

Authors:  Pamela Peralta-Yahya; Brian T Carter; Hening Lin; Haiyan Tao; Virginia W Cornish
Journal:  J Am Chem Soc       Date:  2008-12-24       Impact factor: 15.419

5.  Marine microorganisms as source of stereoselective esterases and ketoreductases: kinetic resolution of a prostaglandin intermediate.

Authors:  Valerio De Vitis; Benedetta Guidi; Martina Letizia Contente; Tiziana Granato; Paola Conti; Francesco Molinari; Elena Crotti; Francesca Mapelli; Sara Borin; Daniele Daffonchio; Diego Romano
Journal:  Mar Biotechnol (NY)       Date:  2014-09-30       Impact factor: 3.619

Review 6.  Genomics review of holocellulose deconstruction by aspergilli.

Authors:  Fernando Segato; André R L Damásio; Rosymar C de Lucas; Fabio M Squina; Rolf A Prade
Journal:  Microbiol Mol Biol Rev       Date:  2014-12       Impact factor: 11.056

7.  Advances in monitoring of catabolic genes during bioremediation.

Authors:  Kirsten S Jørgensen
Journal:  Indian J Microbiol       Date:  2008-06-12       Impact factor: 2.461

8.  A biological treasure metagenome: pave a way for big science.

Authors:  So-Youn Park; Geun-Joong Kim
Journal:  Indian J Microbiol       Date:  2008-07-27       Impact factor: 2.461

9.  Structural and functional analysis of a low-temperature-active alkaline esterase from South China Sea marine sediment microbial metagenomic library.

Authors:  Yongfei Hu; Yinghui Liu; Jing Li; Yanbin Feng; Na Lu; Baoli Zhu; Song Xue
Journal:  J Ind Microbiol Biotechnol       Date:  2015-09-08       Impact factor: 3.346

10.  MetaBioME: a database to explore commercially useful enzymes in metagenomic datasets.

Authors:  Vineet K Sharma; Naveen Kumar; Tulika Prakash; Todd D Taylor
Journal:  Nucleic Acids Res       Date:  2009-11-11       Impact factor: 16.971

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