Literature DB >> 18074339

Thermodynamic and structural properties of methanol-water solutions using nonadditive interaction models.

Yang Zhong1, G Lee Warren, Sandeep Patel.   

Abstract

We study bulk structural and thermodynamic properties of methanol-water solutions via molecular dynamics simulations using novel interaction potentials based on the charge equilibration (fluctuating charge) formalism to explicitly account for molecular polarization at the atomic level. The study uses the TIP4P-FQ potential for water-water interactions, and the CHARMM-based (Chemistry at HARvard Molecular Mechanics) fluctuating charge potential for methanol-methanol and methanol-water interactions. In terms of bulk solution properties, we discuss liquid densities, enthalpies of mixing, dielectric constants, self-diffusion constants, as well as structural properties related to local hydrogen bonding structure as manifested in radial distribution functions and cluster analysis. We further explore the electronic response of water and methanol in the differing local environments established by the interaction of each species predominantly with molecules of the other species. The current force field for the alcohol-water interaction performs reasonably well for most properties, with the greatest deviation from experiment observed for the excess mixing enthalpies, which are predicted to be too favorable. This is qualitatively consistent with the overestimation of the methanol-water gas-phase interaction energy for the lowest-energy conformer (methanol as proton donor). Hydration free energies for methanol in TIP4P-FQ water are predicted to be -5.6 +/- 0.2 kcal/mol, in respectable agreement with the experimental value of -5.1 kcal/mol. With respect to solution microstructure, the present cluster analysis suggests that the microscale environment for concentrations where select thermodynamic quantities reach extremal values is described by a bipercolating network structure. Copyright 2007 Wiley Periodicals, Inc.

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Year:  2008        PMID: 18074339      PMCID: PMC4212651          DOI: 10.1002/jcc.20877

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  14 in total

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Authors:  Alan Grossfield; Pengyu Ren; Jay W Ponder
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2.  CHARMM fluctuating charge force field for proteins: II protein/solvent properties from molecular dynamics simulations using a nonadditive electrostatic model.

Authors:  Sandeep Patel; Alexander D Mackerell; Charles L Brooks
Journal:  J Comput Chem       Date:  2004-09       Impact factor: 3.376

3.  Unified approach for molecular dynamics and density-functional theory.

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Journal:  Phys Rev Lett       Date:  1985-11-25       Impact factor: 9.161

4.  A nonadditive methanol force field: bulk liquid and liquid-vapor interfacial properties via molecular dynamics simulations using a fluctuating charge model.

Authors:  Sandeep Patel; Charles L Brooks
Journal:  J Chem Phys       Date:  2005-01-08       Impact factor: 3.488

5.  Structure, thermodynamics, and liquid-vapor equilibrium of ethanol from molecular-dynamics simulations using nonadditive interactions.

Authors:  Sandeep Patel; Charles L Brooks
Journal:  J Chem Phys       Date:  2005-10-22       Impact factor: 3.488

6.  Liquid-vapor interface of methanol-water mixtures: a molecular dynamics study.

Authors:  Tsun-Mei Chang; Liem X Dang
Journal:  J Phys Chem B       Date:  2005-03-31       Impact factor: 2.991

7.  Molecular dynamics simulations of liquid methanol and methanol-water mixtures with polarizable models.

Authors:  Haibo Yu; Daan P Geerke; Haiyan Liu; Wilfred F van Gunsteren
Journal:  J Comput Chem       Date:  2006-10       Impact factor: 3.376

8.  Methanol-water solutions: a bi-percolating liquid mixture.

Authors:  L Dougan; S P Bates; R Hargreaves; J P Fox; J Crain; J L Finney; V Reat; A K Soper
Journal:  J Chem Phys       Date:  2004-10-01       Impact factor: 3.488

9.  Ab initio molecular dynamics simulation of the structure and proton transport dynamics of methanol-water solutions.

Authors:  Joseph A Morrone; Kiryn E Haslinger; Mark E Tuckerman
Journal:  J Phys Chem B       Date:  2006-03-02       Impact factor: 2.991

10.  CHARMM fluctuating charge force field for proteins: I parameterization and application to bulk organic liquid simulations.

Authors:  Sandeep Patel; Charles L Brooks
Journal:  J Comput Chem       Date:  2004-01-15       Impact factor: 3.376

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  7 in total

1.  Interfacial structure, thermodynamics, and electrostatics of aqueous methanol solutions via molecular dynamics simulations using charge equilibration models.

Authors:  Sandeep Patel; Yang Zhong; Brad A Bauer; Joseph E Davis
Journal:  J Phys Chem B       Date:  2009-07-09       Impact factor: 2.991

2.  Molecular modeling and dynamics studies with explicit inclusion of electronic polarizability. Theory and applications.

Authors:  Pedro E M Lopes; Benoit Roux; Alexander D Mackerell
Journal:  Theor Chem Acc       Date:  2009-09       Impact factor: 1.702

3.  Nonadditive empirical force fields for short-chain linear alcohols: methanol to butanol. Hydration free energetics and Kirkwood-Buff analysis using charge equilibration models.

Authors:  Yang Zhong; Sandeep Patel
Journal:  J Phys Chem B       Date:  2010-09-02       Impact factor: 2.991

4.  Phase-transfer energetics of small-molecule alcohols across the water-hexane interface: molecular dynamics simulations using charge equilibration models.

Authors:  Brad A Bauer; Yang Zhong; David J Meninger; Joseph E Davis; Sandeep Patel
Journal:  J Mol Graph Model       Date:  2010-10-01       Impact factor: 2.518

Review 5.  Charge equilibration force fields for molecular dynamics simulations of lipids, bilayers, and integral membrane protein systems.

Authors:  Timothy R Lucas; Brad A Bauer; Sandeep Patel
Journal:  Biochim Biophys Acta       Date:  2011-09-24

6.  A comparative Kirkwood-Buff study of aqueous methanol solutions modeled by the CHARMM additive and Drude polarizable force fields.

Authors:  Bin Lin; Xibing He; Alexander D MacKerell
Journal:  J Phys Chem B       Date:  2013-08-29       Impact factor: 2.991

7.  Incorporating Phase-Dependent Polarizability in Non-Additive Electrostatic Models for Molecular Dynamics Simulations of the Aqueous Liquid-Vapor Interface.

Authors:  Brad A Bauer; G Lee Warren; Sandeep Patel
Journal:  J Chem Theory Comput       Date:  2009-01-08       Impact factor: 6.006

  7 in total

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