Literature DB >> 16838298

Molecular dynamics simulations of liquid methanol and methanol-water mixtures with polarizable models.

Haibo Yu1, Daan P Geerke, Haiyan Liu, Wilfred F van Gunsteren.   

Abstract

A polarizable model for simulation of liquid methanol, compatible with the COS/G2 water model, has been developed using the Charge-on-Spring (COS) technique. The model consists of three point charges, with one polarizable center on the oxygen atom. The Lennard-Jones parameters on the oxygen atom together with the molecular polarizability were varied to reproduce the experimental heat of vaporization and density of liquid methanol at ambient conditions. We examined the energies of various methanol dimers in the gas phase and compared them with values obtained from ab initio calculations. The model was then used to study the thermodynamic, dynamic, structural, and dielectric properties of liquid methanol as well as of a methanol-water mixture. A microscopic picture of the structure of pure liquid methanol and of the methanol-water mixture is provided. Good agreement was found between the results from our model simulations and available experimental and ab initio calculation data. In particular, the experimental dielectric permittivity of 32 could be reproduced, which had been shown to be difficult when using nonpolarizable models. Copyright 2006 Wiley Periodicals, Inc.

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Year:  2006        PMID: 16838298     DOI: 10.1002/jcc.20429

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  13 in total

1.  Toward Learned Chemical Perception of Force Field Typing Rules.

Authors:  Camila Zanette; Caitlin C Bannan; Christopher I Bayly; Josh Fass; Michael K Gilson; Michael R Shirts; John D Chodera; David L Mobley
Journal:  J Chem Theory Comput       Date:  2018-12-24       Impact factor: 6.006

2.  Thermodynamic and structural properties of methanol-water solutions using nonadditive interaction models.

Authors:  Yang Zhong; G Lee Warren; Sandeep Patel
Journal:  J Comput Chem       Date:  2008-05       Impact factor: 3.376

3.  Polarizable empirical force field for the primary and secondary alcohol series based on the classical Drude model.

Authors:  Victor M Anisimov; Igor V Vorobyov; Benoît Roux; Alexander D Mackerell
Journal:  J Chem Theory Comput       Date:  2007       Impact factor: 6.006

4.  Interfacial structure, thermodynamics, and electrostatics of aqueous methanol solutions via molecular dynamics simulations using charge equilibration models.

Authors:  Sandeep Patel; Yang Zhong; Brad A Bauer; Joseph E Davis
Journal:  J Phys Chem B       Date:  2009-07-09       Impact factor: 2.991

5.  Molecular modeling and dynamics studies with explicit inclusion of electronic polarizability. Theory and applications.

Authors:  Pedro E M Lopes; Benoit Roux; Alexander D Mackerell
Journal:  Theor Chem Acc       Date:  2009-09       Impact factor: 1.702

6.  Nonadditive empirical force fields for short-chain linear alcohols: methanol to butanol. Hydration free energetics and Kirkwood-Buff analysis using charge equilibration models.

Authors:  Yang Zhong; Sandeep Patel
Journal:  J Phys Chem B       Date:  2010-09-02       Impact factor: 2.991

7.  Application of Molecular Dynamics Simulations in Molecular Property Prediction I: Density and Heat of Vaporization.

Authors:  Junmei Wang; Hou Tingjun
Journal:  J Chem Theory Comput       Date:  2011-07-12       Impact factor: 6.006

8.  Polarizable Atomic Multipole-based Molecular Mechanics for Organic Molecules.

Authors:  Pengyu Ren; Chuanjie Wu; Jay W Ponder
Journal:  J Chem Theory Comput       Date:  2011-10-11       Impact factor: 6.006

Review 9.  Molecular mechanics.

Authors:  Kenno Vanommeslaeghe; Olgun Guvench; Alexander D MacKerell
Journal:  Curr Pharm Des       Date:  2014       Impact factor: 3.116

10.  Incorporating Phase-Dependent Polarizability in Non-Additive Electrostatic Models for Molecular Dynamics Simulations of the Aqueous Liquid-Vapor Interface.

Authors:  Brad A Bauer; G Lee Warren; Sandeep Patel
Journal:  J Chem Theory Comput       Date:  2009-01-08       Impact factor: 6.006

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