Literature DB >> 18074102

Genome analysis and its significance in four unicellular algae, Cyanidioschyzon [corrected] merolae, Ostreococcus tauri, Chlamydomonas reinhardtii, and Thalassiosira pseudonana.

Osami Misumi1, Yamato Yoshida, Keiji Nishida, Takayuki Fujiwara, Takayuki Sakajiri, Syunsuke Hirooka, Yoshiki Nishimura, Tsuneyoshi Kuroiwa.   

Abstract

Algae play a more important role than land plants in the maintenance of the global environment and productivity. Progress in genome analyses of these organisms means that we can now obtain information on algal genomes, global annotation and gene expression. The full genome information for several algae has already been analyzed. Whole genomes of the red alga Cyanidioschyzon [corrected] merolae, the green algae Ostreococcus tauri and Chlamydomonas reinhardtii, and the diatom Thalassiosira pseudonana have been sequenced. Genome composition and the features of cells among the four algae were compared. Each alga maintains basic genes as photosynthetic eukaryotes and possesses additional gene groups to represent their particular characteristics. This review discusses and introduces the latest research that makes the best use of the particular features of each organism and the significance of genome analysis to study biological phenomena. In particular, examples of post-genome studies of organelle multiplication in C. merolae based on analyzed genome information are presented.

Entities:  

Mesh:

Year:  2007        PMID: 18074102     DOI: 10.1007/s10265-007-0133-9

Source DB:  PubMed          Journal:  J Plant Res        ISSN: 0918-9440            Impact factor:   2.629


  70 in total

1.  Plastid division is driven by a complex mechanism that involves differential transition of the bacterial and eukaryotic division rings.

Authors:  M Takahara; T Mori; H Kuroiwa; T Higashiyama; T Kuroiwa
Journal:  Plant Cell       Date:  2001-10       Impact factor: 11.277

2.  Improvement of culture conditions and evidence for nuclear transformation by homologous recombination in a red alga, Cyanidioschyzon merolae 10D.

Authors:  Ayumi Minoda; Rei Sakagami; Fumi Yagisawa; Tsuneyoshi Kuroiwa; Kan Tanaka
Journal:  Plant Cell Physiol       Date:  2004-06       Impact factor: 4.927

3.  Analysis of Thalassiosira pseudonana silicon transporters indicates distinct regulatory levels and transport activity through the cell cycle.

Authors:  Kimberlee Thamatrakoln; Mark Hildebrand
Journal:  Eukaryot Cell       Date:  2006-12-15

4.  High-efficiency transformation of Chlamydomonas reinhardtii by electroporation.

Authors:  K Shimogawara; S Fujiwara; A Grossman; H Usuda
Journal:  Genetics       Date:  1998-04       Impact factor: 4.562

5.  An mt(+) gamete-specific nuclease that targets mt(-) chloroplasts during sexual reproduction in C. reinhardtii.

Authors:  Yoshiki Nishimura; Osami Misumi; Ko Kato; Noriko Inada; Tetsuya Higashiyama; Yu Momoyama; Tsuneyoshi Kuroiwa
Journal:  Genes Dev       Date:  2002-05-01       Impact factor: 11.361

6.  Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.

Authors:  Evelyne Derelle; Conchita Ferraz; Stephane Rombauts; Pierre Rouzé; Alexandra Z Worden; Steven Robbens; Frédéric Partensky; Sven Degroeve; Sophie Echeynié; Richard Cooke; Yvan Saeys; Jan Wuyts; Kamel Jabbari; Chris Bowler; Olivier Panaud; Benoît Piégu; Steven G Ball; Jean-Philippe Ral; François-Yves Bouget; Gwenael Piganeau; Bernard De Baets; André Picard; Michel Delseny; Jacques Demaille; Yves Van de Peer; Hervé Moreau
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-25       Impact factor: 11.205

7.  The minimal eukaryotic ribosomal DNA units in the primitive red alga Cyanidioschyzon merolae.

Authors:  Shinichiro Maruyama; Osami Misumi; Yasuyuki Ishii; Shuichi Asakawa; Atsushi Shimizu; Takashi Sasaki; Motomichi Matsuzaki; Tadasu Shin-i; Hisayoshi Nozaki; Yuji Kohara; Nobuyoshi Shimizu; Tsuneyoshi Kuroiwa
Journal:  DNA Res       Date:  2004-04-30       Impact factor: 4.458

8.  Proteomic characterization of the Chlamydomonas reinhardtii chloroplast ribosome. Identification of proteins unique to th e70 S ribosome.

Authors:  Kenichi Yamaguchi; María Verónica Beligni; Susana Prieto; Paul A Haynes; W Hayes McDonald; John R Yates; Stephen P Mayfield
Journal:  J Biol Chem       Date:  2003-06-24       Impact factor: 5.157

9.  Stable nuclear transformation of Chlamydomonas using the Chlamydomonas gene for nitrate reductase.

Authors:  K L Kindle; R A Schnell; E Fernández; P A Lefebvre
Journal:  J Cell Biol       Date:  1989-12       Impact factor: 10.539

10.  A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae.

Authors:  Hisayoshi Nozaki; Hiroyoshi Takano; Osami Misumi; Kimihiro Terasawa; Motomichi Matsuzaki; Shinichiro Maruyama; Keiji Nishida; Fumi Yagisawa; Yamato Yoshida; Takayuki Fujiwara; Susumu Takio; Katsunori Tamura; Sung Jin Chung; Soichi Nakamura; Haruko Kuroiwa; Kan Tanaka; Naoki Sato; Tsuneyoshi Kuroiwa
Journal:  BMC Biol       Date:  2007-07-10       Impact factor: 7.431

View more
  11 in total

1.  Comparative analysis of miRNAs and their targets across four plant species.

Authors:  Dorina Lenz; Patrick May; Dirk Walther
Journal:  BMC Res Notes       Date:  2011-11-08

Review 2.  The green algal eyespot apparatus: a primordial visual system and more?

Authors:  Georg Kreimer
Journal:  Curr Genet       Date:  2008-12-24       Impact factor: 3.886

3.  Ostreococcus tauri ADP-glucose pyrophosphorylase reveals alternative paths for the evolution of subunit roles.

Authors:  Misty L Kuhn; Christine A Falaschetti; Miguel A Ballicora
Journal:  J Biol Chem       Date:  2009-09-08       Impact factor: 5.157

Review 4.  Do red and green make brown?: perspectives on plastid acquisitions within chromalveolates.

Authors:  Richard G Dorrell; Alison G Smith
Journal:  Eukaryot Cell       Date:  2011-05-27

5.  Genomics of Volvocine Algae.

Authors:  James G Umen; Bradley J S C Olson
Journal:  Adv Bot Res       Date:  2012       Impact factor: 2.175

6.  Structural organization of very small chromosomes: study on a single-celled evolutionary distant eukaryote Giardia intestinalis.

Authors:  Pavla Tůmová; Magdalena Uzlíková; Gerhard Wanner; Eva Nohýnková
Journal:  Chromosoma       Date:  2014-08-30       Impact factor: 4.316

7.  Cloning and characterization of two novel chloroplastic glycerol-3-phosphate dehydrogenases from Dunaliella viridis.

Authors:  Yunxia He; Xiangzong Meng; Qianlan Fan; Xiaoliang Sun; Zhengkai Xu; Rentao Song
Journal:  Plant Mol Biol       Date:  2009-06-24       Impact factor: 4.076

8.  Phylogenomic study of lipid genes involved in microalgal biofuel production-candidate gene mining and metabolic pathway analyses.

Authors:  Namrata Misra; Prasanna Kumar Panda; Bikram Kumar Parida; Barada Kanta Mishra
Journal:  Evol Bioinform Online       Date:  2012-09-20       Impact factor: 1.625

9.  Genome-wide comparative analysis of annexin superfamily in plants.

Authors:  Sravan Kumar Jami; Greg B Clark; Belay T Ayele; Paula Ashe; Pulugurtha Bharadwaja Kirti
Journal:  PLoS One       Date:  2012-11-02       Impact factor: 3.240

10.  Comparative analysis of the phytocyanin gene family in 10 plant species: a focus on Zea mays.

Authors:  Jun Cao; Xiang Li; Yueqing Lv; Lina Ding
Journal:  Front Plant Sci       Date:  2015-07-13       Impact factor: 5.753

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.