Literature DB >> 18066072

Bottom-up genome assembly using the Bacillus subtilis genome vector.

Mitsuhiro Itaya1, Kyoko Fujita, Azusa Kuroki, Kenji Tsuge.   

Abstract

We established a protocol to construct complete recombinant genomes from their small contiguous DNA pieces and obtained the genomes of mouse mitochondrion and rice chloroplast using a B. subtilis genome (BGM) vector. This method allows the design of any recombinant genomes, valuable not only for fundamental research in systems biology and synthetic biology but also for various applications in the life sciences.

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Year:  2007        PMID： 18066072     DOI： 10.1038/nmeth1143

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


  44 in total

1.  Chemical synthesis of the mouse mitochondrial genome.

Authors:  Daniel G Gibson; Hamilton O Smith; Clyde A Hutchison; J Craig Venter; Chuck Merryman
Journal:  Nat Methods       Date:  2010-10-10       Impact factor: 28.547

2.  An extreme thermophile, Thermus thermophilus, is a polyploid bacterium.

Authors:  Naoto Ohtani; Masaru Tomita; Mitsuhiro Itaya
Journal:  J Bacteriol       Date:  2010-08-20       Impact factor: 3.490

Review 3.  The challenges of informatics in synthetic biology: from biomolecular networks to artificial organisms.

Authors:  Gil Alterovitz; Taro Muso; Marco F Ramoni
Journal:  Brief Bioinform       Date:  2009-11-11       Impact factor: 11.622

Review 4.  Bricks and blueprints: methods and standards for DNA assembly.

Authors:  Arturo Casini; Marko Storch; Geoffrey S Baldwin; Tom Ellis
Journal:  Nat Rev Mol Cell Biol       Date:  2015-06-17       Impact factor: 94.444

5.  ICRPfinder: a fast pattern design algorithm for coding sequences and its application in finding potential restriction enzyme recognition sites.

Authors:  Chao Li; Yuhua Li; Xiangmin Zhang; Phillip Stafford; Valentin Dinu
Journal:  BMC Bioinformatics       Date:  2009-09-11       Impact factor: 3.169

6.  Pairwise selection assembly for sequence-independent construction of long-length DNA.

Authors:  William J Blake; Brad A Chapman; Anuradha Zindal; Michael E Lee; Shaun M Lippow; Brian M Baynes
Journal:  Nucleic Acids Res       Date:  2010-03-01       Impact factor: 16.971

7.  Integration of stable extracellular DNA released from Escherichia coli into the Bacillus subtilis genome vector by culture mix method.

Authors:  Mitsuhiro Itaya; Shinya Kaneko
Journal:  Nucleic Acids Res       Date:  2010-03-22       Impact factor: 16.971

8.  BglBricks: A flexible standard for biological part assembly.

Authors:  J Christopher Anderson; John E Dueber; Mariana Leguia; Gabriel C Wu; Jonathan A Goler; Adam P Arkin; Jay D Keasling
Journal:  J Biol Eng       Date:  2010-01-20       Impact factor: 4.355

9.  Cloning whole bacterial genomes in yeast.

Authors:  Gwynedd A Benders; Vladimir N Noskov; Evgeniya A Denisova; Carole Lartigue; Daniel G Gibson; Nacyra Assad-Garcia; Ray-Yuan Chuang; William Carrera; Monzia Moodie; Mikkel A Algire; Quang Phan; Nina Alperovich; Sanjay Vashee; Chuck Merryman; J Craig Venter; Hamilton O Smith; John I Glass; Clyde A Hutchison
Journal:  Nucleic Acids Res       Date:  2010-03-07       Impact factor: 16.971

10.  Mutagenic inverted repeat assisted genome engineering (MIRAGE).

Authors:  Nikhil U Nair; Huimin Zhao
Journal:  Nucleic Acids Res       Date:  2008-12-02       Impact factor: 16.971
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