Literature DB >> 18065447

Stochastic severing of actin filaments by actin depolymerizing factor/cofilin controls the emergence of a steady dynamical regime.

Jeremy Roland1, Julien Berro, Alphée Michelot, Laurent Blanchoin, Jean-Louis Martiel.   

Abstract

Actin dynamics (i.e., polymerization/depolymerization) powers a large number of cellular processes. However, a great deal remains to be learned to explain the rapid actin filament turnover observed in vivo. Here, we developed a minimal kinetic model that describes key details of actin filament dynamics in the presence of actin depolymerizing factor (ADF)/cofilin. We limited the molecular mechanism to 1), the spontaneous growth of filaments by polymerization of actin monomers, 2), the ageing of actin subunits in filaments, 3), the cooperative binding of ADF/cofilin to actin filament subunits, and 4), filament severing by ADF/cofilin. First, from numerical simulations and mathematical analysis, we found that the average filament length, L, is controlled by the concentration of actin monomers (power law: 5/6) and ADF/cofilin (power law: -2/3). We also showed that the average subunit residence time inside the filament, T, depends on the actin monomer (power law: -1/6) and ADF/cofilin (power law: -2/3) concentrations. In addition, filament length fluctuations are approximately 20% of the average filament length. Moreover, ADF/cofilin fragmentation while modulating filament length keeps filaments in a high molar ratio of ATP- or ADP-P(i) versus ADP-bound subunits. This latter property has a protective effect against a too high severing activity of ADF/cofilin. We propose that the activity of ADF/cofilin in vivo is under the control of an affinity gradient that builds up dynamically along growing actin filaments. Our analysis shows that ADF/cofilin regulation maintains actin filaments in a highly dynamical state compatible with the cytoskeleton dynamics observed in vivo.

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Year:  2007        PMID: 18065447      PMCID: PMC2257902          DOI: 10.1529/biophysj.107.121988

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  31 in total

1.  Reconstitution of actin-based motility of Listeria and Shigella using pure proteins.

Authors:  T P Loisel; R Boujemaa; D Pantaloni; M F Carlier
Journal:  Nature       Date:  1999-10-07       Impact factor: 49.962

2.  Real-time measurements of actin filament polymerization by total internal reflection fluorescence microscopy.

Authors:  Jeffrey R Kuhn; Thomas D Pollard
Journal:  Biophys J       Date:  2004-11-19       Impact factor: 4.033

3.  Drosophila Spire is an actin nucleation factor.

Authors:  Margot E Quinlan; John E Heuser; Eugen Kerkhoff; R Dyche Mullins
Journal:  Nature       Date:  2005-01-27       Impact factor: 49.962

4.  Actin polymerization kinetics, cap structure, and fluctuations.

Authors:  Dimitrios Vavylonis; Qingbo Yang; Ben O'Shaughnessy
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-06       Impact factor: 11.205

5.  Control of the assembly of ATP- and ADP-actin by formins and profilin.

Authors:  David R Kovar; Elizabeth S Harris; Rachel Mahaffy; Henry N Higgs; Thomas D Pollard
Journal:  Cell       Date:  2006-01-27       Impact factor: 41.582

6.  Cofilin increases the torsional flexibility and dynamics of actin filaments.

Authors:  Ewa Prochniewicz; Neal Janson; David D Thomas; Enrique M De la Cruz
Journal:  J Mol Biol       Date:  2005-09-26       Impact factor: 5.469

7.  Cofilin binding to muscle and non-muscle actin filaments: isoform-dependent cooperative interactions.

Authors:  Enrique M De La Cruz
Journal:  J Mol Biol       Date:  2004-12-30       Impact factor: 5.469

8.  Actin depolymerizing factor (ADF/cofilin) enhances the rate of filament turnover: implication in actin-based motility.

Authors:  M F Carlier; V Laurent; J Santolini; R Melki; D Didry; G X Xia; Y Hong; N H Chua; D Pantaloni
Journal:  J Cell Biol       Date:  1997-03-24       Impact factor: 10.539

9.  Synergy between actin depolymerizing factor/cofilin and profilin in increasing actin filament turnover.

Authors:  D Didry; M F Carlier; D Pantaloni
Journal:  J Biol Chem       Date:  1998-10-02       Impact factor: 5.157

10.  Arp2/3 complex and actin depolymerizing factor/cofilin in dendritic organization and treadmilling of actin filament array in lamellipodia.

Authors:  T M Svitkina; G G Borisy
Journal:  J Cell Biol       Date:  1999-05-31       Impact factor: 10.539

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  32 in total

1.  The kinetics of cooperative cofilin binding reveals two states of the cofilin-actin filament.

Authors:  Enrique M De La Cruz; David Sept
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

2.  Efficient modeling, simulation and coarse-graining of biological complexity with NFsim.

Authors:  Michael W Sneddon; James R Faeder; Thierry Emonet
Journal:  Nat Methods       Date:  2010-12-26       Impact factor: 28.547

3.  The effects of filament aging and annealing on a model lamellipodium undergoing disassembly by severing.

Authors:  P J Michalski; A E Carlsson
Journal:  Phys Biol       Date:  2010-05-26       Impact factor: 2.583

4.  Nonequilibrium self-assembly of a filament coupled to ATP/GTP hydrolysis.

Authors:  Padinhateeri Ranjith; David Lacoste; Kirone Mallick; Jean-François Joanny
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

5.  Modeling the synergy of cofilin and Arp2/3 in lamellipodial protrusive activity.

Authors:  Nessy Tania; John Condeelis; Leah Edelstein-Keshet
Journal:  Biophys J       Date:  2013-11-05       Impact factor: 4.033

6.  Arabidopsis actin depolymerizing factor4 modulates the stochastic dynamic behavior of actin filaments in the cortical array of epidermal cells.

Authors:  Jessica L Henty; Samuel W Bledsoe; Parul Khurana; Richard B Meagher; Brad Day; Laurent Blanchoin; Christopher J Staiger
Journal:  Plant Cell       Date:  2011-10-18       Impact factor: 11.277

7.  A mathematical model of actin filament turnover for fitting FRAP data.

Authors:  Aliaksandr A Halavatyi; Petr V Nazarov; Ziad Al Tanoury; Vladimir V Apanasovich; Mikalai Yatskou; Evelyne Friederich
Journal:  Eur Biophys J       Date:  2009-11-18       Impact factor: 1.733

8.  Predicted Effects of Severing Enzymes on the Length Distribution and Total Mass of Microtubules.

Authors:  Yin-Wei Kuo; Olivier Trottier; Jonathon Howard
Journal:  Biophys J       Date:  2019-10-25       Impact factor: 4.033

9.  Cofilin-linked changes in actin filament flexibility promote severing.

Authors:  Brannon R McCullough; Elena E Grintsevich; Christine K Chen; Hyeran Kang; Alan L Hutchison; Arnon Henn; Wenxiang Cao; Cristian Suarez; Jean-Louis Martiel; Laurent Blanchoin; Emil Reisler; Enrique M De La Cruz
Journal:  Biophys J       Date:  2011-07-06       Impact factor: 4.033

Review 10.  There is more than one way to model an elephant. Experiment-driven modeling of the actin cytoskeleton.

Authors:  Jonathon A Ditlev; Bruce J Mayer; Leslie M Loew
Journal:  Biophys J       Date:  2013-02-05       Impact factor: 4.033

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