Literature DB >> 18051050

Detection of spatial activation patterns as unsupervised segmentation of fMRI data.

Polina Golland1, Yulia Golland, Rafael Malach.   

Abstract

In functional connectivity analysis, networks of interest are defined based on correlation with the mean time course of a user-selected 'seed' region. In this work we propose to simultaneously estimate the optimal representative time courses that summarize the fMRI data well and the partition of the volume into a set of disjoint regions that are best explained by these representative time courses. Our approach offers two advantages. First, is removes the sensitivity of the analysis to the details of the seed selection. Second, it substantially simplifies group analysis by eliminating the need for a subject-specific threshold at which correlation values are deemed significant. This unsupervised technique generalizes connectivity analysis to situations where candidate seeds are difficult to identify reliably or are unknown. Our experimental results indicate that the functional segmentation provides a robust, anatomically meaningful and consistent model for functional connectivity in fMRI.

Mesh:

Year:  2007        PMID: 18051050      PMCID: PMC4465976          DOI: 10.1007/978-3-540-75757-3_14

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  16 in total

1.  On clustering fMRI time series.

Authors:  C Goutte; P Toft; E Rostrup; F Nielsen; L K Hansen
Journal:  Neuroimage       Date:  1999-03       Impact factor: 6.556

2.  A multistep unsupervised fuzzy clustering analysis of fMRI time series.

Authors:  M J Fadili; S Ruan; D Bloyet; B Mazoyer
Journal:  Hum Brain Mapp       Date:  2000-08       Impact factor: 5.038

3.  Hierarchical clustering to measure connectivity in fMRI resting-state data.

Authors:  Dietmar Cordes; Vic Haughton; John D Carew; Konstantinos Arfanakis; Ken Maravilla
Journal:  Magn Reson Imaging       Date:  2002-05       Impact factor: 2.546

4.  Feature characterization in fMRI data: the Information Bottleneck approach.

Authors:  Bertrand Thirion; Olivier Faugeras
Journal:  Med Image Anal       Date:  2004-12       Impact factor: 8.545

5.  Tensorial extensions of independent component analysis for multisubject FMRI analysis.

Authors:  C F Beckmann; S M Smith
Journal:  Neuroimage       Date:  2005-01-08       Impact factor: 6.556

6.  Analysis of fMRI data by blind separation into independent spatial components.

Authors:  M J McKeown; S Makeig; G G Brown; T P Jung; S S Kindermann; A J Bell; T J Sejnowski
Journal:  Hum Brain Mapp       Date:  1998       Impact factor: 5.038

7.  Fuzzy clustering of gradient-echo functional MRI in the human visual cortex. Part II: quantification.

Authors:  E Moser; M Diemling; R Baumgartner
Journal:  J Magn Reson Imaging       Date:  1997 Nov-Dec       Impact factor: 4.813

8.  An information-maximization approach to blind separation and blind deconvolution.

Authors:  A J Bell; T J Sejnowski
Journal:  Neural Comput       Date:  1995-11       Impact factor: 2.026

9.  Functional connectivity: the principal-component analysis of large (PET) data sets.

Authors:  K J Friston; C D Frith; P F Liddle; R S Frackowiak
Journal:  J Cereb Blood Flow Metab       Date:  1993-01       Impact factor: 6.200

10.  A sequence of object-processing stages revealed by fMRI in the human occipital lobe.

Authors:  K Grill-Spector; T Kushnir; T Hendler; S Edelman; Y Itzchak; R Malach
Journal:  Hum Brain Mapp       Date:  1998       Impact factor: 5.038

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  17 in total

1.  Task-specific functional brain geometry from model maps.

Authors:  Georg Langs; Dimitris Samaras; Nikos Paragios; Jean Honorio; Nelly Alia-Klein; Dardo Tomasi; Nora D Volkow; Rita Z Goldstein
Journal:  Med Image Comput Comput Assist Interv       Date:  2008

2.  Discovering structure in the space of activation profiles in fMRI.

Authors:  Danial Lashkari; Ed Vul; Nancy Kanwisher; Polina Golland
Journal:  Med Image Comput Comput Assist Interv       Date:  2008

3.  Data-driven functional clustering reveals dominance of face, place, and body selectivity in the ventral visual pathway.

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Journal:  J Neurophysiol       Date:  2012-06-27       Impact factor: 2.714

4.  Search for patterns of functional specificity in the brain: a nonparametric hierarchical Bayesian model for group fMRI data.

Authors:  Danial Lashkari; Ramesh Sridharan; Edward Vul; Po-Jang Hsieh; Nancy Kanwisher; Polina Golland
Journal:  Neuroimage       Date:  2011-08-22       Impact factor: 6.556

5.  Nonparametric Hierarchical Bayesian Model for Functional Brain Parcellation.

Authors:  Danial Lashkari; Ramesh Sridharan; Edward Vul; Po-Jang Hsieh; Nancy Kanwisher; Polina Golland
Journal:  Conf Comput Vis Pattern Recognit Workshops       Date:  2010-06-13

Review 6.  Machine learning in resting-state fMRI analysis.

Authors:  Meenakshi Khosla; Keith Jamison; Gia H Ngo; Amy Kuceyeski; Mert R Sabuncu
Journal:  Magn Reson Imaging       Date:  2019-06-05       Impact factor: 2.546

7.  Reliability of cortical activity during natural stimulation.

Authors:  Uri Hasson; Rafael Malach; David J Heeger
Journal:  Trends Cogn Sci       Date:  2009-12-11       Impact factor: 20.229

8.  Discovering structure in the space of fMRI selectivity profiles.

Authors:  Danial Lashkari; Ed Vul; Nancy Kanwisher; Polina Golland
Journal:  Neuroimage       Date:  2010-01-04       Impact factor: 6.556

9.  Exploratory fMRI analysis without spatial normalization.

Authors:  Danial Lashkari; Polina Golland
Journal:  Inf Process Med Imaging       Date:  2009

10.  Inter-subject alignment of human cortical anatomy using functional connectivity.

Authors:  Bryan R Conroy; Benjamin D Singer; J Swaroop Guntupalli; Peter J Ramadge; James V Haxby
Journal:  Neuroimage       Date:  2013-05-14       Impact factor: 6.556

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