Literature DB >> 15567705

Feature characterization in fMRI data: the Information Bottleneck approach.

Bertrand Thirion1, Olivier Faugeras.   

Abstract

Clustering is a well-known technique for the analysis of Functional Magnetic Resonance Imaging (fMRI) data, whose main advantage is certainly flexibility: given a metric on the dataset, it "summarizes" the main characteristics of the data. But intrinsic to this approach are also the problem of defining correctly the quantization accuracy, and the number of clusters necessary to describe the data. The Information Bottleneck (IB) approach to vector quantization, proposed by Bialek and Tishby, addresses these difficulties: (1) it deals with an explicit trade-off between quantization and data fidelity; (2) it does so during the clustering procedure and not post hoc; (3) it takes into account the full statistical distribution of the features within the feature space and not only their most likely value; last, it is principled through an information theoretic formulation, which is relevant in many situations. In this paper, we present how to benefit from this method to analyze fMRI data. Our application is the clustering of voxels according to the magnitude of their responses to several experimental conditions. The IB quantization provides a consistent representation of the data, allowing for an easy interpretation and comparison of datasets.

Mesh:

Year:  2004        PMID: 15567705     DOI: 10.1016/j.media.2004.09.001

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  9 in total

1.  Detection of spatial activation patterns as unsupervised segmentation of fMRI data.

Authors:  Polina Golland; Yulia Golland; Rafael Malach
Journal:  Med Image Comput Comput Assist Interv       Date:  2007

2.  Data-driven clustering reveals a fundamental subdivision of the human cortex into two global systems.

Authors:  Yulia Golland; Polina Golland; Shlomo Bentin; Rafael Malach
Journal:  Neuropsychologia       Date:  2007-10-13       Impact factor: 3.139

3.  Measuring structural complexity in brain images.

Authors:  Karl Young; Norbert Schuff
Journal:  Neuroimage       Date:  2007-11-12       Impact factor: 6.556

4.  Search for patterns of functional specificity in the brain: a nonparametric hierarchical Bayesian model for group fMRI data.

Authors:  Danial Lashkari; Ramesh Sridharan; Edward Vul; Po-Jang Hsieh; Nancy Kanwisher; Polina Golland
Journal:  Neuroimage       Date:  2011-08-22       Impact factor: 6.556

5.  Nonparametric Hierarchical Bayesian Model for Functional Brain Parcellation.

Authors:  Danial Lashkari; Ramesh Sridharan; Edward Vul; Po-Jang Hsieh; Nancy Kanwisher; Polina Golland
Journal:  Conf Comput Vis Pattern Recognit Workshops       Date:  2010-06-13

6.  Spatial Patterns and Functional Profiles for Discovering Structure in fMRI Data.

Authors:  Polina Golland; Danial Lashkari; Archana Venkataraman
Journal:  Conf Rec Asilomar Conf Signals Syst Comput       Date:  2008-10

7.  Categories and Functional Units: An Infinite Hierarchical Model for Brain Activations.

Authors:  Danial Lashkari; Ramesh Sridharan; Polina Golland
Journal:  Adv Neural Inf Process Syst       Date:  2010-01-01

8.  MEG source localization of spatially extended generators of epileptic activity: comparing entropic and hierarchical bayesian approaches.

Authors:  Rasheda Arman Chowdhury; Jean Marc Lina; Eliane Kobayashi; Christophe Grova
Journal:  PLoS One       Date:  2013-02-13       Impact factor: 3.240

9.  Learning from positive examples when the negative class is undetermined--microRNA gene identification.

Authors:  Malik Yousef; Segun Jung; Louise C Showe; Michael K Showe
Journal:  Algorithms Mol Biol       Date:  2008-01-28       Impact factor: 1.405

  9 in total

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