Literature DB >> 18049465

Protein engineers turned evolutionists.

Sergio G Peisajovich1, Dan S Tawfik.   

Abstract

When generating novel tailor-made proteins, protein engineers routinely apply the principles of 'Darwinian' evolution. However, laboratory evolution of proteins also has the potential to test evolutionary theories and reproduce evolutionary scenarios, thus reconstructing putative protein intermediates and providing a glimpse of 'protein fossils'. This commentary describes research at the interface of applied and fundamental molecular evolution, and provides a personal view of how synergy between fundamental and applied experiments indicates novel and more efficient ways of generating new proteins in the laboratory.

Mesh:

Substances:

Year:  2007        PMID: 18049465     DOI: 10.1038/nmeth1207-991

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  41 in total

1.  Enzyme functional evolution through improved catalysis of ancestrally nonpreferred substrates.

Authors:  Ruiqi Huang; Frank Hippauf; Diana Rohrbeck; Maria Haustein; Katrin Wenke; Janie Feike; Noah Sorrelle; Birgit Piechulla; Todd J Barkman
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-06       Impact factor: 11.205

2.  Tracing determinants of dual substrate specificity in glycoside hydrolase family 5.

Authors:  Zhiwei Chen; Gregory D Friedland; Jose H Pereira; Sonia A Reveco; Rosa Chan; Joshua I Park; Michael P Thelen; Paul D Adams; Adam P Arkin; Jay D Keasling; Harvey W Blanch; Blake A Simmons; Kenneth L Sale; Dylan Chivian; Swapnil R Chhabra
Journal:  J Biol Chem       Date:  2012-05-29       Impact factor: 5.157

Review 3.  Epistasis in protein evolution.

Authors:  Tyler N Starr; Joseph W Thornton
Journal:  Protein Sci       Date:  2016-02-28       Impact factor: 6.725

4.  Reverse evolution leads to genotypic incompatibility despite functional and active site convergence.

Authors:  Miriam Kaltenbach; Colin J Jackson; Eleanor C Campbell; Florian Hollfelder; Nobuhiko Tokuriki
Journal:  Elife       Date:  2015-08-14       Impact factor: 8.140

Review 5.  Directed evolution drives the next generation of biocatalysts.

Authors:  Nicholas J Turner
Journal:  Nat Chem Biol       Date:  2009-08       Impact factor: 15.040

6.  Ultrahigh-throughput screening in drop-based microfluidics for directed evolution.

Authors:  Jeremy J Agresti; Eugene Antipov; Adam R Abate; Keunho Ahn; Amy C Rowat; Jean-Christophe Baret; Manuel Marquez; Alexander M Klibanov; Andrew D Griffiths; David A Weitz
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-08       Impact factor: 11.205

7.  Diminishing returns and tradeoffs constrain the laboratory optimization of an enzyme.

Authors:  Nobuhiko Tokuriki; Colin J Jackson; Livnat Afriat-Jurnou; Kirsten T Wyganowski; Renmei Tang; Dan S Tawfik
Journal:  Nat Commun       Date:  2012       Impact factor: 14.919

Review 8.  The dawn of evolutionary genome engineering.

Authors:  Csaba Pál; Balázs Papp; György Pósfai
Journal:  Nat Rev Genet       Date:  2014-05-28       Impact factor: 53.242

Review 9.  Exploring protein fitness landscapes by directed evolution.

Authors:  Philip A Romero; Frances H Arnold
Journal:  Nat Rev Mol Cell Biol       Date:  2009-12       Impact factor: 94.444

Review 10.  Directing the evolution of Rubisco and Rubisco activase: first impressions of a new tool for photosynthesis research.

Authors:  Oliver Mueller-Cajar; Spencer M Whitney
Journal:  Photosynth Res       Date:  2008-07-15       Impact factor: 3.573

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.