Literature DB >> 24866756

The dawn of evolutionary genome engineering.

Csaba Pál1, Balázs Papp1, György Pósfai1.   

Abstract

Genome engineering strategies--such as genome editing, reduction and shuffling, and de novo genome synthesis--enable the modification of specific genomic locations in a directed and combinatorial manner. These approaches offer an unprecedented opportunity to study central evolutionary issues in which natural genetic variation is limited or biased, which sheds light on the evolutionary forces driving complex and extremely slowly evolving traits; the selective constraints on genome architecture; and the reconstruction of ancestral states of cellular structures and networks.

Mesh:

Year:  2014        PMID: 24866756     DOI: 10.1038/nrg3746

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  65 in total

1.  Directed evolution of a genetic circuit.

Authors:  Yohei Yokobayashi; Ron Weiss; Frances H Arnold
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-25       Impact factor: 11.205

2.  Combining two genomes in one cell: stable cloning of the Synechocystis PCC6803 genome in the Bacillus subtilis 168 genome.

Authors:  Mitsuhiro Itaya; Kenji Tsuge; Maki Koizumi; Kyoko Fujita
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-18       Impact factor: 11.205

3.  Genome evolution and adaptation in a long-term experiment with Escherichia coli.

Authors:  Jeffrey E Barrick; Dong Su Yu; Sung Ho Yoon; Haeyoung Jeong; Tae Kwang Oh; Dominique Schneider; Richard E Lenski; Jihyun F Kim
Journal:  Nature       Date:  2009-10-18       Impact factor: 49.962

4.  Did evolution select a nonrandom "alphabet" of amino acids?

Authors:  Gayle K Philip; Stephen J Freeland
Journal:  Astrobiology       Date:  2011-03-24       Impact factor: 4.335

5.  Evolvability and hierarchy in rewired bacterial gene networks.

Authors:  Mark Isalan; Caroline Lemerle; Konstantinos Michalodimitrakis; Carsten Horn; Pedro Beltrao; Emanuele Raineri; Mireia Garriga-Canut; Luis Serrano
Journal:  Nature       Date:  2008-04-17       Impact factor: 49.962

6.  Programming cells by multiplex genome engineering and accelerated evolution.

Authors:  Harris H Wang; Farren J Isaacs; Peter A Carr; Zachary Z Sun; George Xu; Craig R Forest; George M Church
Journal:  Nature       Date:  2009-07-26       Impact factor: 49.962

Review 7.  Genome dynamics during experimental evolution.

Authors:  Jeffrey E Barrick; Richard E Lenski
Journal:  Nat Rev Genet       Date:  2013-10-29       Impact factor: 53.242

8.  Rapid diversification of cell signaling phenotypes by modular domain recombination.

Authors:  Sergio G Peisajovich; Joan E Garbarino; Ping Wei; Wendell A Lim
Journal:  Science       Date:  2010-04-16       Impact factor: 47.728

9.  RNA-guided editing of bacterial genomes using CRISPR-Cas systems.

Authors:  Wenyan Jiang; David Bikard; David Cox; Feng Zhang; Luciano A Marraffini
Journal:  Nat Biotechnol       Date:  2013-01-29       Impact factor: 54.908

10.  Design of orthogonal genetic switches based on a crosstalk map of σs, anti-σs, and promoters.

Authors:  Virgil A Rhodius; Thomas H Segall-Shapiro; Brian D Sharon; Amar Ghodasara; Ekaterina Orlova; Hannah Tabakh; David H Burkhardt; Kevin Clancy; Todd C Peterson; Carol A Gross; Christopher A Voigt
Journal:  Mol Syst Biol       Date:  2013-10-29       Impact factor: 11.429

View more
  20 in total

Review 1.  Directed evolution combined with synthetic biology strategies expedite semi-rational engineering of genes and genomes.

Authors:  Zhen Kang; Junli Zhang; Peng Jin; Sen Yang
Journal:  Bioengineered       Date:  2015-01-26       Impact factor: 3.269

Review 2.  DNA nanotechnology: new adventures for an old warhorse.

Authors:  Bijan Zakeri; Timothy K Lu
Journal:  Curr Opin Chem Biol       Date:  2015-06-05       Impact factor: 8.822

3.  Multiplexed tracking of combinatorial genomic mutations in engineered cell populations.

Authors:  Ramsey I Zeitoun; Andrew D Garst; George D Degen; Gur Pines; Thomas J Mansell; Tirzah Y Glebes; Nanette R Boyle; Ryan T Gill
Journal:  Nat Biotechnol       Date:  2015-03-23       Impact factor: 54.908

4.  Genome instability mediates the loss of key traits by Acinetobacter baylyi ADP1 during laboratory evolution.

Authors:  Brian A Renda; Aurko Dasgupta; Dacia Leon; Jeffrey E Barrick
Journal:  J Bacteriol       Date:  2014-12-15       Impact factor: 3.490

5.  Methods for measuring the evolutionary stability of engineered genomes to improve their longevity.

Authors:  Scott L Nuismer; Nathan C Layman; Alec J Redwood; Baca Chan; James J Bull
Journal:  Synth Biol (Oxf)       Date:  2021-08-23

Review 6.  Genomes by design.

Authors:  Adrian D Haimovich; Paul Muir; Farren J Isaacs
Journal:  Nat Rev Genet       Date:  2015-08-11       Impact factor: 53.242

7.  A highly precise and portable genome engineering method allows comparison of mutational effects across bacterial species.

Authors:  Ákos Nyerges; Bálint Csörgő; István Nagy; Balázs Bálint; Péter Bihari; Viktória Lázár; Gábor Apjok; Kinga Umenhoffer; Balázs Bogos; György Pósfai; Csaba Pál
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-16       Impact factor: 11.205

Review 8.  Overcoming Challenges in Engineering the Genetic Code.

Authors:  M J Lajoie; D Söll; G M Church
Journal:  J Mol Biol       Date:  2015-09-05       Impact factor: 5.469

9.  The LASER database: Formalizing design rules for metabolic engineering.

Authors:  James D Winkler; Andrea L Halweg-Edwards; Ryan T Gill
Journal:  Metab Eng Commun       Date:  2015-06-16

10.  Genetic manipulation of reptilian embryos: toward an understanding of cortical development and evolution.

Authors:  Tadashi Nomura; Wataru Yamashita; Hitoshi Gotoh; Katsuhiko Ono
Journal:  Front Neurosci       Date:  2015-02-24       Impact factor: 4.677

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.