Literature DB >> 21112305

Environmental conditions affect the kinetics of nucleation of amyloid fibrils and determine their morphology.

Bertrand Morel1, Lorena Varela, Ana I Azuaga, Francisco Conejero-Lara.   

Abstract

To understand and tackle amyloid-related diseases, it is crucial to investigate the factors that modulate amyloid formation of proteins. Our previous studies proved that the N47A mutant of the α-spectrin SH3 (Spc-SH3) domain forms amyloid fibrils quickly under mildly acidic conditions. Here, we analyze how experimental conditions influence the kinetics of assembly and the final morphology of the fibrils. Early formation of curly fibrils occurs after a considerable conformational change of the protein and the concomitant formation of small oligomers. These processes are strongly accelerated by an increase in salt concentration and temperature, and to a lesser extent by a reduction in pH. The rate-limiting step in these events has a high activation enthalpy, which is significantly reduced by an increase in NaCl concentration. At low-to-moderate NaCl concentrations, the curly fibrils convert to straight and twisted amyloid fibrils after long incubation times, but only in the presence of soluble species in the mixture, which suggests that the curly fibrils and the twisted amyloid fibrils are diverging assembly pathways. The results suggest that the influence of environmental variables on protein solvation is crucial in determining the nucleation kinetics, the pathway of assembly, and the final fibril morphology.
Copyright © 2010 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 21112305      PMCID: PMC2998616          DOI: 10.1016/j.bpj.2010.10.039

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  46 in total

1.  Evidence for a partially folded intermediate in alpha-synuclein fibril formation.

Authors:  V N Uversky; J Li; A L Fink
Journal:  J Biol Chem       Date:  2001-01-10       Impact factor: 5.157

2.  Assembly of amyloid protofibrils via critical oligomers--a novel pathway of amyloid formation.

Authors:  A J Modler; K Gast; G Lutsch; G Damaschun
Journal:  J Mol Biol       Date:  2003-01-03       Impact factor: 5.469

Review 3.  Amyloid-fibril formation. Proposed mechanisms and relevance to conformational disease.

Authors:  Eva Zerovnik
Journal:  Eur J Biochem       Date:  2002-07

4.  Amyloid protofilaments from the calcium-binding protein equine lysozyme: formation of ring and linear structures depends on pH and metal ion concentration.

Authors:  Mantas Malisauskas; Vladimir Zamotin; Jana Jass; Wim Noppe; Christopher M Dobson; Ludmilla A Morozova-Roche
Journal:  J Mol Biol       Date:  2003-07-18       Impact factor: 5.469

5.  Rationalization of the effects of mutations on peptide and protein aggregation rates.

Authors:  Fabrizio Chiti; Massimo Stefani; Niccolò Taddei; Giampietro Ramponi; Christopher M Dobson
Journal:  Nature       Date:  2003-08-14       Impact factor: 49.962

Review 6.  Protein aggregation and aggregate toxicity: new insights into protein folding, misfolding diseases and biological evolution.

Authors:  Massimo Stefani; Christopher M Dobson
Journal:  J Mol Med (Berl)       Date:  2003-08-27       Impact factor: 4.599

7.  The thermodynamic stability of amyloid fibrils studied by differential scanning calorimetry.

Authors:  Bertrand Morel; Lorena Varela; Francisco Conejero-Lara
Journal:  J Phys Chem B       Date:  2010-03-25       Impact factor: 2.991

8.  Nucleated conformational conversion and the replication of conformational information by a prion determinant.

Authors:  T R Serio; A G Cashikar; A S Kowal; G J Sawicki; J J Moslehi; L Serpell; M F Arnsdorf; S L Lindquist
Journal:  Science       Date:  2000-08-25       Impact factor: 47.728

9.  Kinetic studies of amyloid beta-protein fibril assembly. Differential effects of alpha-helix stabilization.

Authors:  Youcef Fezoui; David B Teplow
Journal:  J Biol Chem       Date:  2002-07-30       Impact factor: 5.157

10.  Amyloid beta -protein (Abeta) assembly: Abeta 40 and Abeta 42 oligomerize through distinct pathways.

Authors:  Gal Bitan; Marina D Kirkitadze; Aleksey Lomakin; Sabrina S Vollers; George B Benedek; David B Teplow
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-27       Impact factor: 11.205

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  25 in total

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Authors:  Yuichi Yoshimura; Mats A Holmberg; Predrag Kukic; Camilla B Andersen; Alejandro Mata-Cabana; S Fabio Falsone; Michele Vendruscolo; Ellen A A Nollen; Frans A A Mulder
Journal:  J Biol Chem       Date:  2017-03-23       Impact factor: 5.157

Review 2.  SH3 domains: modules of protein-protein interactions.

Authors:  Natalya Kurochkina; Udayan Guha
Journal:  Biophys Rev       Date:  2012-06-20

3.  How accurate are your simulations? Effects of confined aqueous volume and AMBER FF99SB and CHARMM22/CMAP force field parameters on structural ensembles of intrinsically disordered proteins: Amyloid-β42 in water.

Authors:  Orkid Coskuner Weber; Vladimir N Uversky
Journal:  Intrinsically Disord Proteins       Date:  2017-10-30

4.  Nanodisc-Forming Scaffold Protein Promoted Retardation of Amyloid-Beta Aggregation.

Authors:  Bikash Ranjan Sahoo; Takuya Genjo; Sarah J Cox; Andrea K Stoddard; G M Anantharamaiah; Carol Fierke; Ayyalusamy Ramamoorthy
Journal:  J Mol Biol       Date:  2018-08-28       Impact factor: 5.469

Review 5.  Non-Arrhenius protein aggregation.

Authors:  Wei Wang; Christopher J Roberts
Journal:  AAPS J       Date:  2013-04-25       Impact factor: 4.009

6.  Fluorescence Investigation of Interactions Between Novel Benzanthrone Dyes and Lysozyme Amyloid Fibrils.

Authors:  Kateryna Vus; Valeriya Trusova; Galyna Gorbenko; Rohit Sood; Elena Kirilova; Georgiy Kirilov; Inta Kalnina; Paavo Kinnunen
Journal:  J Fluoresc       Date:  2013-12-27       Impact factor: 2.217

Review 7.  Protein aggregation: in silico algorithms and applications.

Authors:  R Prabakaran; Puneet Rawat; A Mary Thangakani; Sandeep Kumar; M Michael Gromiha
Journal:  Biophys Rev       Date:  2021-01-17

8.  Rapid Conversion of Amyloid-Beta 1-40 Oligomers to Mature Fibrils through a Self-Catalytic Bimolecular Process.

Authors:  Bertrand Morel; María P Carrasco-Jiménez; Samuel Jurado; Francisco Conejero-Lara
Journal:  Int J Mol Sci       Date:  2021-06-14       Impact factor: 5.923

9.  Insights into the Origin of Distinct Medin Fibril Morphologies Induced by Incubation Conditions and Seeding.

Authors:  Hannah A Davies; Chiu Fan Lee; Leanne Miller; Lu-Ning Liu; Jillian Madine
Journal:  Int J Mol Sci       Date:  2018-05-03       Impact factor: 5.923

10.  Early amyloidogenic oligomerization studied through fluorescence lifetime correlation spectroscopy.

Authors:  Jose M Paredes; Salvador Casares; Maria J Ruedas-Rama; Elena Fernandez; Fabio Castello; Lorena Varela; Angel Orte
Journal:  Int J Mol Sci       Date:  2012-07-25       Impact factor: 6.208

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