Literature DB >> 18029299

An AMP nucleosidase gene knockout in Escherichia coli elevates intracellular ATP levels and increases cold tolerance.

Brittany A Morrison1, Daniel H Shain.   

Abstract

Disparate psychrophiles (e.g. glacier ice worms, bacteria, algae and fungi) elevate steady-state intracellular ATP levels as temperatures decline, which has been interpreted as a compensatory mechanism to offset reductions in molecular motion and Gibb's free energy of ATP hydrolysis. In this study, we sought to manipulate steady-state ATP levels in the mesophilic bacterium, Escherichia coli, to investigate the relationship between cold temperature survivability and elevated intracellular ATP. Based on known energetic pathways and feedback loops, we targeted the AMP nucleotidase (amn) gene, which is thought to encode the primary AMP degradative enzyme in prokaryotes. By knocking out amn in wild-type E. coli DY330 cells using recombineering methodology, we generated a mutant (AMNk) that elevated intracellular ATP levels by more than 30% across its viable temperature range. As temperature was lowered, the relative ATP disparity between AMNk and DY330 cells increased to approximately 66% at 10 degrees C, and was approximately 100% after storage at 0 degrees C for 5-7 days. AMNk cells stored at 0 degrees C for 7 days displayed approximately fivefold higher cell viability than wild-type DY330 cells treated in the same manner.

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Year:  2008        PMID: 18029299      PMCID: PMC2412920          DOI: 10.1098/rsbl.2007.0432

Source DB:  PubMed          Journal:  Biol Lett        ISSN: 1744-9561            Impact factor:   3.703


  16 in total

1.  Isolation and characterization of psychrophiles producing cold-active beta-galactosidase.

Authors:  T Nakagawa; Y Fujimoto; M Uchino; T Miyaji; K Takano; N Tomizuka
Journal:  Lett Appl Microbiol       Date:  2003       Impact factor: 2.858

2.  Four kingdoms on glacier ice: convergent energetic processes boost energy levels as temperatures fall.

Authors:  Michael J Napolitano; Daniel H Shain
Journal:  Proc Biol Sci       Date:  2004-08-07       Impact factor: 5.349

Review 3.  Psychrophilic microorganisms: challenges for life.

Authors:  Salvino D'Amico; Tony Collins; Jean-Claude Marx; Georges Feller; Charles Gerday
Journal:  EMBO Rep       Date:  2006-04       Impact factor: 8.807

Review 4.  Cold adaptation in marine organisms.

Authors:  I A Johnston
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1990-01-30       Impact factor: 6.237

5.  Comparative effect of temperature on the oxidative metabolism of whole and disrupted cells of a psychrophilic and a mesophilic species of Bacillus.

Authors:  J L Stokes; J M Larkin
Journal:  J Bacteriol       Date:  1968-01       Impact factor: 3.490

6.  Effects of short-term hypothermic perfusion and cold storage on function of the isolated-perfused dog kidney.

Authors:  J H Southard; M J Rice; M S Ametani; F O Belzer
Journal:  Cryobiology       Date:  1985-04       Impact factor: 2.487

7.  Enzymes of adenylate metabolism and their role in hibernation of the white-tailed prairie dog, Cynomys leucurus.

Authors:  T E English; K B Storey
Journal:  Arch Biochem Biophys       Date:  2000-04-01       Impact factor: 4.013

8.  The ice worm, Mesenchytraeus solifugus, elevates adenylate levels at low physiological temperature.

Authors:  Michael J Napolitano; Robert G Nagele; Daniel H Shain
Journal:  Comp Biochem Physiol A Mol Integr Physiol       Date:  2004-01       Impact factor: 2.320

9.  Liver metabolism in cold hypoxia: a comparison of energy metabolism and glycolysis in cold-sensitive and cold-resistant mammals.

Authors:  T A Churchill; K M Cheetham; S Simpkin; C J Green; L C Wang; B J Fuller
Journal:  J Comp Physiol B       Date:  1994       Impact factor: 2.200

Review 10.  What determines the intracellular ATP concentration.

Authors:  Fazoil I Ataullakhanov; Victor M Vitvitsky
Journal:  Biosci Rep       Date:  2002 Oct-Dec       Impact factor: 3.840

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  11 in total

1.  Energy metabolism response to low-temperature and frozen conditions in Psychrobacter cryohalolentis.

Authors:  Pierre Amato; Brent C Christner
Journal:  Appl Environ Microbiol       Date:  2008-12-05       Impact factor: 4.792

2.  Adenosine monophosphate affects competence development and plasmid DNA transformation in Escherichia coli.

Authors:  Yan Zhang; Wenhua Li; Liming Wang; Ping Shen; Zhixiong Xie
Journal:  Curr Microbiol       Date:  2013-06-07       Impact factor: 2.188

Review 3.  Transition States, analogues, and drug development.

Authors:  Vern L Schramm
Journal:  ACS Chem Biol       Date:  2013-01-04       Impact factor: 5.100

4.  Structural Evolution of the Glacier Ice Worm Fo ATP Synthase Complex.

Authors:  Shirley A Lang; Patrick McIlroy; Daniel H Shain
Journal:  Protein J       Date:  2020-04       Impact factor: 2.371

Review 5.  Enzymatic Transition States and Drug Design.

Authors:  Vern L Schramm
Journal:  Chem Rev       Date:  2018-10-18       Impact factor: 60.622

6.  Divergence of AMP Deaminase in the Ice Worm Mesenchytraeus solifugus (Annelida, Clitellata, Enchytraeidae).

Authors:  Roberto Marotta; Bradley R Parry; Daniel H Shain
Journal:  Int J Evol Biol       Date:  2009-07-05

7.  ATP Content and Cell Viability as Indicators for Cryostress Across the Diversity of Life.

Authors:  Felizitas Bajerski; Johanna Stock; Benjamin Hanf; Tatyana Darienko; Elke Heine-Dobbernack; Maike Lorenz; Lisa Naujox; E R J Keller; H M Schumacher; Thomas Friedl; Sonja Eberth; Hans-Peter Mock; Olaf Kniemeyer; Jörg Overmann
Journal:  Front Physiol       Date:  2018-07-17       Impact factor: 4.566

8.  Atypical Evolution of the F1Fo Adenosine Triphosphate Synthase Regulatory ATP6 subunit in Glacier Ice Worms (Annelida: Clitellata: Mesenchytraeus).

Authors:  Shirley A Lang; Daniel H Shain
Journal:  Evol Bioinform Online       Date:  2018-07-13       Impact factor: 1.625

9.  Five animal phyla in glacier ice reveal unprecedented biodiversity in New Zealand's Southern Alps.

Authors:  Daniel H Shain; Philip M Novis; Andrew G Cridge; Krzysztof Zawierucha; Anthony J Geneva; Peter K Dearden
Journal:  Sci Rep       Date:  2021-02-16       Impact factor: 4.379

10.  Inter and Intraspecific Genomic Divergence in Drosophila montana Shows Evidence for Cold Adaptation.

Authors:  Darren J Parker; R Axel W Wiberg; Urmi Trivedi; Venera I Tyukmaeva; Karim Gharbi; Roger K Butlin; Anneli Hoikkala; Maaria Kankare; Michael G Ritchie
Journal:  Genome Biol Evol       Date:  2018-08-01       Impact factor: 3.416

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