Literature DB >> 18024565

Insights from sequencing fungal and oomycete genomes: what can we learn about plant disease and the evolution of pathogenicity?

Darren M Soanes1, Thomas A Richards, Nicholas J Talbot.   

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Year:  2007        PMID: 18024565      PMCID: PMC2174898          DOI: 10.1105/tpc.107.056663

Source DB:  PubMed          Journal:  Plant Cell        ISSN: 1040-4651            Impact factor:   11.277


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  45 in total

1.  Improved prediction of signal peptides: SignalP 3.0.

Authors:  Jannick Dyrløv Bendtsen; Henrik Nielsen; Gunnar von Heijne; Søren Brunak
Journal:  J Mol Biol       Date:  2004-07-16       Impact factor: 5.469

2.  Trafficking arms: oomycete effectors enter host plant cells.

Authors:  Paul R J Birch; Anne P Rehmany; Leighton Pritchard; Sophien Kamoun; Jim L Beynon
Journal:  Trends Microbiol       Date:  2005-12-13       Impact factor: 17.079

Review 3.  Secondary metabolite toxins and nutrition of plant pathogenic fungi.

Authors:  Barbara J Howlett
Journal:  Curr Opin Plant Biol       Date:  2006-05-19       Impact factor: 7.834

4.  Emergence of a new disease as a result of interspecific virulence gene transfer.

Authors:  Timothy L Friesen; Eva H Stukenbrock; Zhaohui Liu; Steven Meinhardt; Hua Ling; Justin D Faris; Jack B Rasmussen; Peter S Solomon; Bruce A McDonald; Richard P Oliver
Journal:  Nat Genet       Date:  2006-07-09       Impact factor: 38.330

5.  The genome sequence of the rice blast fungus Magnaporthe grisea.

Authors:  Ralph A Dean; Nicholas J Talbot; Daniel J Ebbole; Mark L Farman; Thomas K Mitchell; Marc J Orbach; Michael Thon; Resham Kulkarni; Jin-Rong Xu; Huaqin Pan; Nick D Read; Yong-Hwan Lee; Ignazio Carbone; Doug Brown; Yeon Yee Oh; Nicole Donofrio; Jun Seop Jeong; Darren M Soanes; Slavica Djonovic; Elena Kolomiets; Cathryn Rehmeyer; Weixi Li; Michael Harding; Soonok Kim; Marc-Henri Lebrun; Heidi Bohnert; Sean Coughlan; Jonathan Butler; Sarah Calvo; Li-Jun Ma; Robert Nicol; Seth Purcell; Chad Nusbaum; James E Galagan; Bruce W Birren
Journal:  Nature       Date:  2005-04-21       Impact factor: 49.962

6.  Magnaporthe grisea pth11p is a novel plasma membrane protein that mediates appressorium differentiation in response to inductive substrate cues.

Authors:  T M DeZwaan; A M Carroll; B Valent; J A Sweigard
Journal:  Plant Cell       Date:  1999-10       Impact factor: 11.277

7.  Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis.

Authors:  Brett M Tyler; Sucheta Tripathy; Xuemin Zhang; Paramvir Dehal; Rays H Y Jiang; Andrea Aerts; Felipe D Arredondo; Laura Baxter; Douda Bensasson; Jim L Beynon; Jarrod Chapman; Cynthia M B Damasceno; Anne E Dorrance; Daolong Dou; Allan W Dickerman; Inna L Dubchak; Matteo Garbelotto; Mark Gijzen; Stuart G Gordon; Francine Govers; Niklaus J Grunwald; Wayne Huang; Kelly L Ivors; Richard W Jones; Sophien Kamoun; Konstantinos Krampis; Kurt H Lamour; Mi-Kyung Lee; W Hayes McDonald; Mónica Medina; Harold J G Meijer; Eric K Nordberg; Donald J Maclean; Manuel D Ospina-Giraldo; Paul F Morris; Vipaporn Phuntumart; Nicholas H Putnam; Sam Rash; Jocelyn K C Rose; Yasuko Sakihama; Asaf A Salamov; Alon Savidor; Chantel F Scheuring; Brian M Smith; Bruno W S Sobral; Astrid Terry; Trudy A Torto-Alalibo; Joe Win; Zhanyou Xu; Hongbin Zhang; Igor V Grigoriev; Daniel S Rokhsar; Jeffrey L Boore
Journal:  Science       Date:  2006-09-01       Impact factor: 47.728

8.  Genome sequencing and analysis of Aspergillus oryzae.

Authors:  Masayuki Machida; Kiyoshi Asai; Motoaki Sano; Toshihiro Tanaka; Toshitaka Kumagai; Goro Terai; Ken-Ichi Kusumoto; Toshihide Arima; Osamu Akita; Yutaka Kashiwagi; Keietsu Abe; Katsuya Gomi; Hiroyuki Horiuchi; Katsuhiko Kitamoto; Tetsuo Kobayashi; Michio Takeuchi; David W Denning; James E Galagan; William C Nierman; Jiujiang Yu; David B Archer; Joan W Bennett; Deepak Bhatnagar; Thomas E Cleveland; Natalie D Fedorova; Osamu Gotoh; Hiroshi Horikawa; Akira Hosoyama; Masayuki Ichinomiya; Rie Igarashi; Kazuhiro Iwashita; Praveen Rao Juvvadi; Masashi Kato; Yumiko Kato; Taishin Kin; Akira Kokubun; Hiroshi Maeda; Noriko Maeyama; Jun-ichi Maruyama; Hideki Nagasaki; Tasuku Nakajima; Ken Oda; Kinya Okada; Ian Paulsen; Kazutoshi Sakamoto; Toshihiko Sawano; Mikio Takahashi; Kumiko Takase; Yasunobu Terabayashi; Jennifer R Wortman; Osamu Yamada; Youhei Yamagata; Hideharu Anazawa; Yoji Hata; Yoshinao Koide; Takashi Komori; Yasuji Koyama; Toshitaka Minetoki; Sivasundaram Suharnan; Akimitsu Tanaka; Katsumi Isono; Satoru Kuhara; Naotake Ogasawara; Hisashi Kikuchi
Journal:  Nature       Date:  2005-12-22       Impact factor: 49.962

9.  Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.

Authors:  James E Galagan; Sarah E Calvo; Christina Cuomo; Li-Jun Ma; Jennifer R Wortman; Serafim Batzoglou; Su-In Lee; Meray Baştürkmen; Christina C Spevak; John Clutterbuck; Vladimir Kapitonov; Jerzy Jurka; Claudio Scazzocchio; Mark Farman; Jonathan Butler; Seth Purcell; Steve Harris; Gerhard H Braus; Oliver Draht; Silke Busch; Christophe D'Enfert; Christiane Bouchier; Gustavo H Goldman; Deborah Bell-Pedersen; Sam Griffiths-Jones; John H Doonan; Jaehyuk Yu; Kay Vienken; Arnab Pain; Michael Freitag; Eric U Selker; David B Archer; Miguel A Peñalva; Berl R Oakley; Michelle Momany; Toshihiro Tanaka; Toshitaka Kumagai; Kiyoshi Asai; Masayuki Machida; William C Nierman; David W Denning; Mark Caddick; Michael Hynes; Mathieu Paoletti; Reinhard Fischer; Bruce Miller; Paul Dyer; Matthew S Sachs; Stephen A Osmani; Bruce W Birren
Journal:  Nature       Date:  2005-12-22       Impact factor: 49.962

10.  Novel G-protein-coupled receptor-like proteins in the plant pathogenic fungus Magnaporthe grisea.

Authors:  Resham D Kulkarni; Michael R Thon; Huaqin Pan; Ralph A Dean
Journal:  Genome Biol       Date:  2005-03-02       Impact factor: 13.583

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  44 in total

1.  Fungal functional genomics: tunable knockout-knock-in expression and tagging strategies.

Authors:  Luis F Larrondo; Hildur V Colot; Christopher L Baker; Jennifer J Loros; Jay C Dunlap
Journal:  Eukaryot Cell       Date:  2009-03-13

2.  Molecular toolkit unlocks life cycle of the panzootic amphibian pathogen Batrachochytrium dendrobatidis.

Authors:  Matthew C Fisher
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-07       Impact factor: 11.205

Review 3.  Xenobiotic efflux in bacteria and fungi: a genomics update.

Authors:  Ravi D Barabote; Jose Thekkiniath; Richard E Strauss; Govindsamy Vediyappan; Joe A Fralick; Michael J San Francisco
Journal:  Adv Enzymol Relat Areas Mol Biol       Date:  2011

4.  Plant biology: Defence at dawn.

Authors:  C Robertson McClung
Journal:  Nature       Date:  2011-02-03       Impact factor: 49.962

5.  Identification of a chitinase-modifying protein from Fusarium verticillioides: truncation of a host resistance protein by a fungalysin metalloprotease.

Authors:  Todd A Naumann; Donald T Wicklow; Neil P J Price
Journal:  J Biol Chem       Date:  2011-08-30       Impact factor: 5.157

Review 6.  Under pressure: investigating the biology of plant infection by Magnaporthe oryzae.

Authors:  Richard A Wilson; Nicholas J Talbot
Journal:  Nat Rev Microbiol       Date:  2009-03       Impact factor: 60.633

7.  Comparative analysis of secreted protein evolution using expressed sequence tags from four poplar leaf rusts (Melampsora spp.).

Authors:  David L Joly; Nicolas Feau; Philippe Tanguay; Richard C Hamelin
Journal:  BMC Genomics       Date:  2010-07-08       Impact factor: 3.969

8.  Species-specific chitin-binding module 18 expansion in the amphibian pathogen Batrachochytrium dendrobatidis.

Authors:  John Abramyan; Jason E Stajich
Journal:  MBio       Date:  2012-06-19       Impact factor: 7.867

9.  Reverse genetics for functional genomics of phytopathogenic fungi and oomycetes.

Authors:  Vijai Bhadauria; Sabine Banniza; Yangdou Wei; You-Liang Peng
Journal:  Comp Funct Genomics       Date:  2009-10-07

10.  Systematic and searchable classification of cytochrome P450 proteins encoded by fungal and oomycete genomes.

Authors:  Venkatesh Moktali; Jongsun Park; Natalie D Fedorova-Abrams; Bongsoo Park; Jaeyoung Choi; Yong-Hwan Lee; Seogchan Kang
Journal:  BMC Genomics       Date:  2012-10-04       Impact factor: 3.969

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