Literature DB >> 16372010

Genome sequencing and analysis of Aspergillus oryzae.

Masayuki Machida1, Kiyoshi Asai, Motoaki Sano, Toshihiro Tanaka, Toshitaka Kumagai, Goro Terai, Ken-Ichi Kusumoto, Toshihide Arima, Osamu Akita, Yutaka Kashiwagi, Keietsu Abe, Katsuya Gomi, Hiroyuki Horiuchi, Katsuhiko Kitamoto, Tetsuo Kobayashi, Michio Takeuchi, David W Denning, James E Galagan, William C Nierman, Jiujiang Yu, David B Archer, Joan W Bennett, Deepak Bhatnagar, Thomas E Cleveland, Natalie D Fedorova, Osamu Gotoh, Hiroshi Horikawa, Akira Hosoyama, Masayuki Ichinomiya, Rie Igarashi, Kazuhiro Iwashita, Praveen Rao Juvvadi, Masashi Kato, Yumiko Kato, Taishin Kin, Akira Kokubun, Hiroshi Maeda, Noriko Maeyama, Jun-ichi Maruyama, Hideki Nagasaki, Tasuku Nakajima, Ken Oda, Kinya Okada, Ian Paulsen, Kazutoshi Sakamoto, Toshihiko Sawano, Mikio Takahashi, Kumiko Takase, Yasunobu Terabayashi, Jennifer R Wortman, Osamu Yamada, Youhei Yamagata, Hideharu Anazawa, Yoji Hata, Yoshinao Koide, Takashi Komori, Yasuji Koyama, Toshitaka Minetoki, Sivasundaram Suharnan, Akimitsu Tanaka, Katsumi Isono, Satoru Kuhara, Naotake Ogasawara, Hisashi Kikuchi.   

Abstract

The genome of Aspergillus oryzae, a fungus important for the production of traditional fermented foods and beverages in Japan, has been sequenced. The ability to secrete large amounts of proteins and the development of a transformation system have facilitated the use of A. oryzae in modern biotechnology. Although both A. oryzae and Aspergillus flavus belong to the section Flavi of the subgenus Circumdati of Aspergillus, A. oryzae, unlike A. flavus, does not produce aflatoxin, and its long history of use in the food industry has proved its safety. Here we show that the 37-megabase (Mb) genome of A. oryzae contains 12,074 genes and is expanded by 7-9 Mb in comparison with the genomes of Aspergillus nidulans and Aspergillus fumigatus. Comparison of the three aspergilli species revealed the presence of syntenic blocks and A. oryzae-specific blocks (lacking synteny with A. nidulans and A. fumigatus) in a mosaic manner throughout the genome of A. oryzae. The blocks of A. oryzae-specific sequence are enriched for genes involved in metabolism, particularly those for the synthesis of secondary metabolites. Specific expansion of genes for secretory hydrolytic enzymes, amino acid metabolism and amino acid/sugar uptake transporters supports the idea that A. oryzae is an ideal microorganism for fermentation.

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Year:  2005        PMID: 16372010     DOI: 10.1038/nature04300

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  320 in total

1.  Modulating endoplasmic reticulum-Golgi cargo receptors for improving secretion of carrier-fused heterologous proteins in the filamentous fungus Aspergillus oryzae.

Authors:  Huy-Dung Hoang; Jun-ichi Maruyama; Katsuhiko Kitamoto
Journal:  Appl Environ Microbiol       Date:  2014-10-31       Impact factor: 4.792

2.  Analysis of the functions of recombination-related genes in the generation of large chromosomal deletions by loop-out recombination in Aspergillus oryzae.

Authors:  Tadashi Takahashi; Masahiro Ogawa; Yasuji Koyama
Journal:  Eukaryot Cell       Date:  2012-01-27

Review 3.  The evolution of sex: a perspective from the fungal kingdom.

Authors:  Soo Chan Lee; Min Ni; Wenjun Li; Cecelia Shertz; Joseph Heitman
Journal:  Microbiol Mol Biol Rev       Date:  2010-06       Impact factor: 11.056

4.  Biosynthesis: not just passing through.

Authors:  Jason M Crawford; Jon Clardy
Journal:  Nat Chem       Date:  2010-10       Impact factor: 24.427

Review 5.  New insights into the formation of fungal aromatic polyketides.

Authors:  Jason M Crawford; Craig A Townsend
Journal:  Nat Rev Microbiol       Date:  2010-12       Impact factor: 60.633

6.  Genome Characterization of Oleaginous Aspergillus oryzae BCC7051: A Potential Fungal-Based Platform for Lipid Production.

Authors:  Chinae Thammarongtham; Intawat Nookaew; Tayvich Vorapreeda; Tanawut Srisuk; Miriam L Land; Sukanya Jeennor; Kobkul Laoteng
Journal:  Curr Microbiol       Date:  2017-09-01       Impact factor: 2.188

7.  Identification of a starter unit acyl-carrier protein transacylase domain in an iterative type I polyketide synthase.

Authors:  Jason M Crawford; Blair C R Dancy; Eric A Hill; Daniel W Udwary; Craig A Townsend
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-27       Impact factor: 11.205

8.  Generation of large chromosomal deletions in koji molds Aspergillus oryzae and Aspergillus sojae via a loop-out recombination.

Authors:  Tadashi Takahashi; Feng Jie Jin; Misao Sunagawa; Masayuki Machida; Yasuji Koyama
Journal:  Appl Environ Microbiol       Date:  2008-10-24       Impact factor: 4.792

9.  The effect of temperature on Natural Antisense Transcript (NAT) expression in Aspergillus flavus.

Authors:  Carrie A Smith; Dominique Robertson; Bethan Yates; Dahlia M Nielsen; Doug Brown; Ralph A Dean; Gary A Payne
Journal:  Curr Genet       Date:  2008-09-24       Impact factor: 3.886

10.  The 2008 update of the Aspergillus nidulans genome annotation: a community effort.

Authors:  Jennifer Russo Wortman; Jane Mabey Gilsenan; Vinita Joardar; Jennifer Deegan; John Clutterbuck; Mikael R Andersen; David Archer; Mojca Bencina; Gerhard Braus; Pedro Coutinho; Hans von Döhren; John Doonan; Arnold J M Driessen; Pawel Durek; Eduardo Espeso; Erzsébet Fekete; Michel Flipphi; Carlos Garcia Estrada; Steven Geysens; Gustavo Goldman; Piet W J de Groot; Kim Hansen; Steven D Harris; Thorsten Heinekamp; Kerstin Helmstaedt; Bernard Henrissat; Gerald Hofmann; Tim Homan; Tetsuya Horio; Hiroyuki Horiuchi; Steve James; Meriel Jones; Levente Karaffa; Zsolt Karányi; Masashi Kato; Nancy Keller; Diane E Kelly; Jan A K W Kiel; Jung-Mi Kim; Ida J van der Klei; Frans M Klis; Andriy Kovalchuk; Nada Krasevec; Christian P Kubicek; Bo Liu; Andrew Maccabe; Vera Meyer; Pete Mirabito; Márton Miskei; Magdalena Mos; Jonathan Mullins; David R Nelson; Jens Nielsen; Berl R Oakley; Stephen A Osmani; Tiina Pakula; Andrzej Paszewski; Ian Paulsen; Sebastian Pilsyk; István Pócsi; Peter J Punt; Arthur F J Ram; Qinghu Ren; Xavier Robellet; Geoff Robson; Bernhard Seiboth; Piet van Solingen; Thomas Specht; Jibin Sun; Naimeh Taheri-Talesh; Norio Takeshita; Dave Ussery; Patricia A vanKuyk; Hans Visser; Peter J I van de Vondervoort; Ronald P de Vries; Jonathan Walton; Xin Xiang; Yi Xiong; An Ping Zeng; Bernd W Brandt; Michael J Cornell; Cees A M J J van den Hondel; Jacob Visser; Stephen G Oliver; Geoffrey Turner
Journal:  Fungal Genet Biol       Date:  2008-12-25       Impact factor: 3.495

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