Literature DB >> 18003206

Cell-graph mining for breast tissue modeling and classification.

Cagatay Bilgin1, Cigdem Demir, Chandandeep Nagi, Bulent Yener.   

Abstract

We consider the problem of automated cancer diagnosis in the context of breast tissues. We present graph theoretical techniques that identify and compute quantitative metrics for tissue characterization and classification. We segment digital images of histopatological tissue samples using k-means algorithm. For each segmented image we generate different cell-graphs using positional coordinates of cells and surrounding matrix components. These cell-graphs have 500-2000 cells(nodes) with 1000-10000 links depending on the tissue and the type of cell-graph being used. We calculate a set of global metrics from cell-graphs and use them as the feature set for learning. We compare our technique, hierarchical cell graphs, with other techniques based on intensity values of images, Delaunay triangulation of the cells, the previous technique we proposed for brain tissue images and with the hybrid approach that we introduce in this paper. Among the compared techniques, hierarchical-graph approach gives 81.8% accuracy whereas we obtain 61.0%, 54.1% and 75.9% accuracy with intensity-based features, Delaunay triangulation and our previous technique, respectively.

Entities:  

Mesh:

Year:  2007        PMID: 18003206     DOI: 10.1109/IEMBS.2007.4353540

Source DB:  PubMed          Journal:  Conf Proc IEEE Eng Med Biol Soc        ISSN: 1557-170X


  18 in total

Review 1.  Histopathological image analysis: a review.

Authors:  Metin N Gurcan; Laura E Boucheron; Ali Can; Anant Madabhushi; Nasir M Rajpoot; B Yener
Journal:  IEEE Rev Biomed Eng       Date:  2009-10-30

2.  Reimagining T Staging Through Artificial Intelligence and Machine Learning Image Processing Approaches in Digital Pathology.

Authors:  Kaustav Bera; Ian Katz; Anant Madabhushi
Journal:  JCO Clin Cancer Inform       Date:  2020-11

3.  Nuclear Shape and Architecture in Benign Fields Predict Biochemical Recurrence in Prostate Cancer Patients Following Radical Prostatectomy: Preliminary Findings.

Authors:  George Lee; Robert W Veltri; Guangjing Zhu; Sahirzeeshan Ali; Jonathan I Epstein; Anant Madabhushi
Journal:  Eur Urol Focus       Date:  2016-06-16

4.  ECM-Aware Cell-Graph Mining for Bone Tissue Modeling and Classification.

Authors:  Cemal Cagatay Bilgin; Peter Bullough; George E Plopper; Bülent Yener
Journal:  Data Min Knowl Discov       Date:  2009-10-21       Impact factor: 3.670

5.  Quantification of three-dimensional cell-mediated collagen remodeling using graph theory.

Authors:  Cemal Cagatay Bilgin; Amanda W Lund; Ali Can; George E Plopper; Bülent Yener
Journal:  PLoS One       Date:  2010-09-30       Impact factor: 3.240

6.  Diagnosis of breast cancer by tissue analysis.

Authors:  Debnath Bhattacharyya; Samir Kumar Bandyopadhyay; Tai-Hoon Kim
Journal:  Chin J Cancer Res       Date:  2013-02       Impact factor: 5.087

Review 7.  The natural and engineered 3D microenvironment as a regulatory cue during stem cell fate determination.

Authors:  Amanda W Lund; Bülent Yener; Jan P Stegemann; George E Plopper
Journal:  Tissue Eng Part B Rev       Date:  2009-09       Impact factor: 6.389

Review 8.  Emerging Themes in Image Informatics and Molecular Analysis for Digital Pathology.

Authors:  Rohit Bhargava; Anant Madabhushi
Journal:  Annu Rev Biomed Eng       Date:  2016-07-11       Impact factor: 9.590

9.  Feature-driven local cell graph (FLocK): New computational pathology-based descriptors for prognosis of lung cancer and HPV status of oropharyngeal cancers.

Authors:  Cheng Lu; Can Koyuncu; German Corredor; Prateek Prasanna; Patrick Leo; XiangXue Wang; Andrew Janowczyk; Kaustav Bera; James Lewis; Vamsidhar Velcheti; Anant Madabhushi
Journal:  Med Image Anal       Date:  2020-11-16       Impact factor: 8.545

10.  Quantification of spatial parameters in 3D cellular constructs using graph theory.

Authors:  A W Lund; C C Bilgin; M A Hasan; L M McKeen; J P Stegemann; B Yener; M J Zaki; G E Plopper
Journal:  J Biomed Biotechnol       Date:  2009-11-10
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