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Literature DB >> 18000994

Extrahelical damaged base recognition by DNA glycosylase enzymes.

Abstract

The efficient enzymatic detection of damaged bases concealed in the DNA double helix is an essential step during DNA repair in all cells. Emergent structural and mechanistic approaches have provided glimpses into this enigmatic molecular recognition event in several systems. A ubiquitous feature of these essential reactions is the binding of the damaged base in an extrahelical binding mode. The reaction pathway by which this remarkable extrahelical state is achieved is of great interest and even more debate.

Mesh：

Substances：
DNA
DNA Glycosylases

Year: 2008 PMID： 18000994 PMCID： PMC2755297 DOI： 10.1002/chem.200701501

Source DB: PubMed Journal: Chemistry ISSN： 0947-6539 Impact factor: 5.236

35 in total

1. Cloning and characterization of hOGG1, a human homolog of the OGG1 gene of Saccharomyces cerevisiae.

Authors: J P Radicella; C Dherin; C Desmaze; M S Fox; S Boiteux
Journal: Proc Natl Acad Sci U S A Date: 1997-07-22 Impact factor: 11.205

Review 2. A mechanistic perspective on the chemistry of DNA repair glycosylases.

Authors: James T Stivers; Yu Lin Jiang
Journal: Chem Rev Date: 2003-07 Impact factor: 60.622

3. Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA.

Authors: S D Bruner; D P Norman; G L Verdine
Journal: Nature Date: 2000-02-24 Impact factor: 49.962

4. Crystal structure of pseudouridine synthase RluA: indirect sequence readout through protein-induced RNA structure.

Authors: Charmaine Hoang; Junjun Chen; Caroline A Vizthum; Jason M Kandel; Christopher S Hamilton; Eugene G Mueller; Adrian R Ferré-D'Amaré
Journal: Mol Cell Date: 2006-11-17 Impact factor: 17.970

Review 5. Computational approaches for investigating base flipping in oligonucleotides.

Authors: U Deva Priyakumar; Alexander D MacKerell
Journal: Chem Rev Date: 2006-02 Impact factor: 60.622

Review 6. Toward a detailed understanding of base excision repair enzymes: transition state and mechanistic analyses of N-glycoside hydrolysis and N-glycoside transfer.

Authors: Paul J Berti; Joe A B McCann
Journal: Chem Rev Date: 2006-02 Impact factor: 60.622

7. Kinetic mechanism of damage site recognition and uracil flipping by Escherichia coli uracil DNA glycosylase.

Authors: J T Stivers; K W Pankiewicz; K A Watanabe
Journal: Biochemistry Date: 1999-01-19 Impact factor: 3.162

8. HhaI methyltransferase flips its target base out of the DNA helix.

Authors: S Klimasauskas; S Kumar; R J Roberts; X Cheng
Journal: Cell Date: 1994-01-28 Impact factor: 41.582

9. Computational analysis of the mode of binding of 8-oxoguanine to formamidopyrimidine-DNA glycosylase.

Authors: Kun Song; Viktor Hornak; Carlos de Los Santos; Arthur P Grollman; Carlos Simmerling
Journal: Biochemistry Date: 2006-09-12 Impact factor: 3.162

10. Kinetics and energetics of base-pair opening in 5'-d(CGCGAATTCGCG)-3' and a substituted dodecamer containing G.T mismatches.

Authors: J G Moe; I M Russu
Journal: Biochemistry Date: 1992-09-15 Impact factor: 3.162

32 in total

1. An unprecedented nucleic acid capture mechanism for excision of DNA damage.

Authors: Emily H Rubinson; A S Prakasha Gowda; Thomas E Spratt; Barry Gold; Brandt F Eichman
Journal: Nature Date: 2010-10-03 Impact factor: 49.962

Review 2. Regulation of DNA glycosylases and their role in limiting disease.

Authors: Harini Sampath; Amanda K McCullough; R Stephen Lloyd
Journal: Free Radic Res Date: 2012-02-06

3. A novel link to base excision repair?

Authors: David M Wilson; Michael M Seidman
Journal: Trends Biochem Sci Date: 2010-02-19 Impact factor: 13.807

4. Base flipping in V(D)J recombination: insights into the mechanism of hairpin formation, the 12/23 rule, and the coordination of double-strand breaks.

Authors: Julien Bischerour; Catherine Lu; David B Roth; Ronald Chalmers
Journal: Mol Cell Biol Date: 2009-08-31 Impact factor: 4.272

5. Probing sequence-specific DNA flexibility in a-tracts and pyrimidine-purine steps by nuclear magnetic resonance (13)C relaxation and molecular dynamics simulations.

Authors: Evgenia N Nikolova; Gavin D Bascom; Ioan Andricioaei; Hashim M Al-Hashimi
Journal: Biochemistry Date: 2012-10-18 Impact factor: 3.162

6. Crystal structure of an RluF-RNA complex: a base-pair rearrangement is the key to selectivity of RluF for U2604 of the ribosome.

Authors: Akram Alian; Andrew DeGiovanni; Sarah L Griner; Janet S Finer-Moore; Robert M Stroud
Journal: J Mol Biol Date: 2009-03-17 Impact factor: 5.469