Literature DB >> 16464016

Computational approaches for investigating base flipping in oligonucleotides.

U Deva Priyakumar1, Alexander D MacKerell.   

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Year:  2006        PMID： 16464016     DOI： 10.1021/cr040475z

Source DB:  PubMed          Journal:  Chem Rev        ISSN： 0009-2665            Impact factor:   60.622


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  46 in total

1.  Conserved patterns in backbone torsional changes allow for single base flipping from duplex DNA with minimal distortion of the double helix.

Authors:  Nilesh K Banavali; Niu Huang; Alexander D MacKerell
Journal:  J Phys Chem B       Date:  2006-06-08       Impact factor: 2.991

2.  Insights into finding a mismatch through the structure of a mispaired DNA bound by a rhodium intercalator.

Authors:  Valérie C Pierre; Jens T Kaiser; Jacqueline K Barton
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-28       Impact factor: 11.205

3.  Base flipping free energy profiles for damaged and undamaged DNA.

Authors:  Han Zheng; Yuqin Cai; Shuang Ding; Yijin Tang; Konstantin Kropachev; Yanzi Zhou; Lihua Wang; Shenglong Wang; Nicholas E Geacintov; Yingkai Zhang; Suse Broyde
Journal:  Chem Res Toxicol       Date:  2010-12-20       Impact factor: 3.739

4.  A two-step nucleotide-flipping mechanism enables kinetic discrimination of DNA lesions by AGT.

Authors:  Jie Hu; Ao Ma; Aaron R Dinner
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-19       Impact factor: 11.205

5.  A molecular dynamics study of slow base flipping in DNA using conformational flooding.

Authors:  Benjamin Bouvier; Helmut Grubmüller
Journal:  Biophys J       Date:  2007-05-11       Impact factor: 4.033

Review 6.  Extrahelical damaged base recognition by DNA glycosylase enzymes.

Authors:  James T Stivers
Journal:  Chemistry       Date:  2008       Impact factor: 5.236

7.  The structure of DNA overstretched from the 5'5' ends differs from the structure of DNA overstretched from the 3'3' ends.

Authors:  Claudia Danilowicz; Charles Limouse; Kristi Hatch; Alyson Conover; Vincent W Coljee; Nancy Kleckner; Mara Prentiss
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-28       Impact factor: 11.205

Review 8.  Damage detection and base flipping in direct DNA alkylation repair.

Authors:  Cai-Guang Yang; Kristel Garcia; Chuan He
Journal:  Chembiochem       Date:  2009-02-13       Impact factor: 3.164

9.  Enthalpy-entropy contribution to carcinogen-induced DNA conformational heterogeneity.

Authors:  Fengting Liang; Bongsup P Cho
Journal:  Biochemistry       Date:  2010-01-19       Impact factor: 3.162

10.  In the absence of writhe, DNA relieves torsional stress with localized, sequence-dependent structural failure to preserve B-form.

Authors:  Graham L Randall; Lynn Zechiedrich; B Montgomery Pettitt
Journal:  Nucleic Acids Res       Date:  2009-07-08       Impact factor: 16.971
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