Literature DB >> 17996720

Ultrafast dynamics of ligands within heme proteins.

Marten H Vos1.   

Abstract

Physiological bond formation and bond breaking events between proteins and ligands and their immediate consequences are difficult to synchronize and study in general. However, diatomic ligands can be photodissociated from heme, and thus in heme proteins ligand release and rebinding dynamics and trajectories have been studied on timescales of the internal vibrations of the protein that drive many biochemical reactions, and longer. The rapidly expanding number of characterized heme proteins involved in a large variety of functions allows comparative dynamics-structure-function studies. In this review, an overview is given of recent progress in this field, and in particular on initial sensing processes in signaling proteins, and on ligand and electron transfer dynamics in oxidases and cytochromes.

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Year:  2007        PMID: 17996720     DOI: 10.1016/j.bbabio.2007.10.004

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  25 in total

1.  Ultrafast ligand dynamics in the heme-based GAF sensor domains of the histidine kinases DosS and DosT from Mycobacterium tuberculosis.

Authors:  Marten H Vos; Latifa Bouzhir-Sima; Jean-Christophe Lambry; Hao Luo; Julian J Eaton-Rye; Alexandra Ioanoviciu; Paul R Ortiz de Montellano; Ursula Liebl
Journal:  Biochemistry       Date:  2011-12-09       Impact factor: 3.162

2.  Effect of DNA binding on geminate CO recombination kinetics in CO-sensing transcription factor CooA.

Authors:  Abdelkrim Benabbas; Venugopal Karunakaran; Hwan Youn; Thomas L Poulos; Paul M Champion
Journal:  J Biol Chem       Date:  2012-04-28       Impact factor: 5.157

3.  Picosecond primary structural transition of the heme is retarded after nitric oxide binding to heme proteins.

Authors:  Sergei G Kruglik; Byung-Kuk Yoo; Stefan Franzen; Marten H Vos; Jean-Louis Martin; Michel Negrerie
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-19       Impact factor: 11.205

4.  Nitric oxide binds to the proximal heme coordination site of the ferrocytochrome c/cardiolipin complex: formation mechanism and dynamics.

Authors:  Gary Silkstone; Sofia M Kapetanaki; Ivan Husu; Marten H Vos; Michael T Wilson
Journal:  J Biol Chem       Date:  2010-04-15       Impact factor: 5.157

5.  CO and O2 binding to pseudo-tetradentate ligand-copper(I) complexes with a variable N-donor moiety: kinetic/thermodynamic investigation reveals ligand-induced changes in reaction mechanism.

Authors:  Heather R Lucas; Gerald J Meyer; Kenneth D Karlin
Journal:  J Am Chem Soc       Date:  2010-09-22       Impact factor: 15.419

6.  Isocyanide or nitrosyl complexation to hemes with varying tethered axial base ligand donors: synthesis and characterization.

Authors:  Savita K Sharma; Hyun Kim; Patrick J Rogler; Maxime A Siegler; Kenneth D Karlin
Journal:  J Biol Inorg Chem       Date:  2016-06-27       Impact factor: 3.358

7.  Dynamics of the heme-binding bacterial gas-sensing dissimilative nitrate respiration regulator (DNR) and activation barriers for ligand binding and escape.

Authors:  Laura Lobato; Latifa Bouzhir-Sima; Taku Yamashita; Michael T Wilson; Marten H Vos; Ursula Liebl
Journal:  J Biol Chem       Date:  2014-07-18       Impact factor: 5.157

8.  Ultrafast photochemistry of the bc1 complex.

Authors:  Marten H Vos; Brandon J Reeder; Fevzi Daldal; Ursula Liebl
Journal:  Phys Chem Chem Phys       Date:  2017-03-01       Impact factor: 3.676

9.  Metabolic Switching of Mycobacterium tuberculosis during Hypoxia Is Controlled by the Virulence Regulator PhoP.

Authors:  Prabhat Ranjan Singh; Anil Kumar Vijjamarri; Dibyendu Sarkar
Journal:  J Bacteriol       Date:  2020-03-11       Impact factor: 3.490

Review 10.  The pathway of O₂to the active site in heme-copper oxidases.

Authors:  Olöf Einarsdóttir; William McDonald; Chie Funatogawa; Istvan Szundi; William H Woodruff; R Brian Dyer
Journal:  Biochim Biophys Acta       Date:  2014-07-03
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