Literature DB >> 17984971

Primers on chromatin.

Sabbi Lall1.   

Abstract

To accompany the Focus on Chromatin appearing in this issue of Nature Structural & Molecular Biology, a series of primers has been specially prepared that covers the wealth of knowledge in four areas of chromatin research. These areas include functions associated with covalent histone modifications, the enzymes that mediate these modifications, modules that recognize chromatin, and the ATP-dependent chromatin-remodeling complexes. In such a complex field, the information has inevitably been somewhat simplified. As an example, the correlation between modifications and functions are often context dependent. For instance, H3K9 methylation has been associated with transcriptional activation when present in the coding region of the gene, but has also been associated with repression. The reference list provides further reading and details, as do the Reviews and Perspective in this issue. Although there are many informative structures in this field, space constraints allowed only representative structures to be shown, followed by reference citations for related structures ('3D REF' column). The primers can be used as a stand-alone resource--feel free to tear them out of the issue or print out the PDF versions and modify or add to them yourself as new data emerge. The online versions of the primers contain hyperlinks to the Protein Data Bank as well as 3D view links that allow structural visualization.

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Year:  2007        PMID: 17984971     DOI: 10.1038/nsmb1107-1110

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  16 in total

1.  RCC1 uses a conformationally diverse loop region to interact with the nucleosome: a model for the RCC1-nucleosome complex.

Authors:  Joseph R England; Jiehuan Huang; Matthew J Jennings; Ravindra D Makde; Song Tan
Journal:  J Mol Biol       Date:  2010-03-27       Impact factor: 5.469

Review 2.  Balancing histone methylation activities in psychiatric disorders.

Authors:  Cyril Jayakumar Peter; Schahram Akbarian
Journal:  Trends Mol Med       Date:  2011-03-21       Impact factor: 11.951

Review 3.  ATP-dependent chromatin remodeling enzymes: two heads are not better, just different.

Authors:  Lisa R Racki; Geeta J Narlikar
Journal:  Curr Opin Genet Dev       Date:  2008-03-12       Impact factor: 5.578

4.  The transcriptional coactivator SAYP is a trithorax group signature subunit of the PBAP chromatin remodeling complex.

Authors:  Gillian E Chalkley; Yuri M Moshkin; Karin Langenberg; Karel Bezstarosti; Andras Blastyak; Henrik Gyurkovics; Jeroen A A Demmers; C Peter Verrijzer
Journal:  Mol Cell Biol       Date:  2008-02-25       Impact factor: 4.272

5.  The role of cotranscriptional histone methylations.

Authors:  S Buratowski; T Kim
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2011-03-29

6.  Phosphorylation of histone H2B serine 32 is linked to cell transformation.

Authors:  Andy T Y Lau; Sung-Young Lee; Yan-Ming Xu; Duo Zheng; Yong-Yeon Cho; Feng Zhu; Hong-Gyum Kim; Sheng-Qing Li; Zhiguo Zhang; Ann M Bode; Zigang Dong
Journal:  J Biol Chem       Date:  2011-06-06       Impact factor: 5.157

Review 7.  WSTF does it all: a multifunctional protein in transcription, repair, and replication.

Authors:  Chris Barnett; Jocelyn E Krebs
Journal:  Biochem Cell Biol       Date:  2011-02       Impact factor: 3.626

8.  Three-dimensional structure of human chromatin accessibility complex hCHRAC by electron microscopy.

Authors:  Minghui Hu; Yian-Biao Zhang; Luping Qian; Raymond P Briñas; Larisa Kuznetsova; James F Hainfeld
Journal:  J Struct Biol       Date:  2008-09-10       Impact factor: 2.867

9.  Expanding the landscape of chromatin modification (CM)-related functional domains and genes in human.

Authors:  Shuye Pu; Andrei L Turinsky; James Vlasblom; Tuan On; Xuejian Xiong; Andrew Emili; Zhaolei Zhang; Jack Greenblatt; John Parkinson; Shoshana J Wodak
Journal:  PLoS One       Date:  2010-11-29       Impact factor: 3.240

10.  A novel mammalian flavin-dependent histone demethylase.

Authors:  Aristotele Karytinos; Federico Forneris; Antonella Profumo; Giuseppe Ciossani; Elena Battaglioli; Claudia Binda; Andrea Mattevi
Journal:  J Biol Chem       Date:  2009-04-30       Impact factor: 5.157

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