Literature DB >> 17981494

RNA catalysis: ribozymes, ribosomes, and riboswitches.

Scott A Strobel1, Jesse C Cochrane.   

Abstract

The catalytic mechanisms employed by RNA are chemically more diverse than initially suspected. Divalent metal ions, nucleobases, ribosyl hydroxyl groups, and even functional groups on metabolic cofactors all contribute to the various strategies employed by RNA enzymes. This catalytic breadth raises intriguing evolutionary questions about how RNA lost its biological role in some cases, but not in others, and what catalytic roles RNA might still be playing in biology.

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Year:  2007        PMID: 17981494      PMCID: PMC2184879          DOI: 10.1016/j.cbpa.2007.09.010

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  47 in total

1.  General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme.

Authors:  S Nakano; D M Chadalavada; P C Bevilacqua
Journal:  Science       Date:  2000-02-25       Impact factor: 47.728

2.  Functional involvement of G8 in the hairpin ribozyme cleavage mechanism.

Authors:  R Pinard; K J Hampel; J E Heckman; D Lambert; P A Chan; F Major; J M Burke
Journal:  EMBO J       Date:  2001-11-15       Impact factor: 11.598

Review 3.  Translation: in retrospect and prospect.

Authors:  C R Woese
Journal:  RNA       Date:  2001-08       Impact factor: 4.942

4.  Ribosomal peptidyl transferase can withstand mutations at the putative catalytic nucleotide.

Authors:  N Polacek; M Gaynor; A Yassin; A S Mankin
Journal:  Nature       Date:  2001-05-24       Impact factor: 49.962

5.  The structural basis of ribosome activity in peptide bond synthesis.

Authors:  P Nissen; J Hansen; N Ban; P B Moore; T A Steitz
Journal:  Science       Date:  2000-08-11       Impact factor: 47.728

6.  A second divalent metal ion in the group II intron reaction center.

Authors:  Peter M Gordon; Robert Fong; Joseph A Piccirilli
Journal:  Chem Biol       Date:  2007-06

7.  Analysis of mutations at residues A2451 and G2447 of 23S rRNA in the peptidyltransferase active site of the 50S ribosomal subunit.

Authors:  J Thompson; D F Kim; M O'Connor; K R Lieberman; M A Bayfield; S T Gregory; R Green; H F Noller; A E Dahlberg
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-24       Impact factor: 11.205

8.  Metal-ion coordination by U6 small nuclear RNA contributes to catalysis in the spliceosome.

Authors:  S L Yean; G Wuenschell; J Termini; R J Lin
Journal:  Nature       Date:  2000-12-14       Impact factor: 49.962

9.  The A730 loop is an important component of the active site of the VS ribozyme.

Authors:  D A Lafontaine; T J Wilson; D G Norman; D M Lilley
Journal:  J Mol Biol       Date:  2001-09-28       Impact factor: 5.469

10.  A guanine nucleobase important for catalysis by the VS ribozyme.

Authors:  Timothy J Wilson; Aileen C McLeod; David M J Lilley
Journal:  EMBO J       Date:  2007-04-26       Impact factor: 11.598

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  38 in total

1.  Protonation states of the key active site residues and structural dynamics of the glmS riboswitch as revealed by molecular dynamics.

Authors:  Pavel Banás; Nils G Walter; Jirí Sponer; Michal Otyepka
Journal:  J Phys Chem B       Date:  2010-07-08       Impact factor: 2.991

2.  Characterization of the reaction path and transition states for RNA transphosphorylation models from theory and experiment.

Authors:  Kin-Yiu Wong; Hong Gu; Shuming Zhang; Joseph A Piccirilli; Michael E Harris; Darrin M York
Journal:  Angew Chem Int Ed Engl       Date:  2011-11-11       Impact factor: 15.336

3.  The use of simple model systems to study spliceosomal catalysis.

Authors:  Saba Valadkhan; James L Manley
Journal:  RNA       Date:  2008-11-24       Impact factor: 4.942

Review 4.  Shhh! Silencing by microRNA-155.

Authors:  Grace Teng; F Nina Papavasiliou
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2009-03-12       Impact factor: 6.237

5.  Enzyme-Instructed Self-Assembly of Peptides Containing Phosphoserine to Form Supramolecular Hydrogels as Potential Soft Biomaterials.

Authors:  Jie Zhou; Xuewen Du; Jiaqing Wang; Natsuko Yamagata; Bing Xu
Journal:  Front Chem Sci Eng       Date:  2017-01-13       Impact factor: 4.204

6.  Rapid cross-linking of an RNA internal loop by the anticancer drug cisplatin.

Authors:  Alethia A Hostetter; Erich G Chapman; Victoria J DeRose
Journal:  J Am Chem Soc       Date:  2009-07-08       Impact factor: 15.419

Review 7.  Group I introns and inteins: disparate origins but convergent parasitic strategies.

Authors:  Rahul Raghavan; Michael F Minnick
Journal:  J Bacteriol       Date:  2009-08-07       Impact factor: 3.490

8.  Liposome membrane can induce self-cleavage of RNA that models the core fragments of hammerhead ribozyme.

Authors:  Keishi Suga; Seishiro Tanaka; Hiroshi Umakoshi
Journal:  Eur Biophys J       Date:  2015-09-18       Impact factor: 1.733

Review 9.  Structured non-coding RNAs and the RNP Renaissance.

Authors:  J Robert Hogg; Kathleen Collins
Journal:  Curr Opin Chem Biol       Date:  2008-10-23       Impact factor: 8.822

Review 10.  Experimental analyses of the chemical dynamics of ribozyme catalysis.

Authors:  Michael E Harris; Adam G Cassano
Journal:  Curr Opin Chem Biol       Date:  2008-10-24       Impact factor: 8.822

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