Literature DB >> 17965171

Building blocks for plant gene assembly.

Mansour Karimi1, Annick Bleys, Rudy Vanderhaeghen, Pierre Hilson.   

Abstract

The MultiSite Gateway cloning system, based on site-specific recombination, enables the assembly of multiple DNA fragments in predefined order, orientation, and frame register. To streamline the construction of recombinant genes for functional analysis in plants, we have built a collection of 36 reference Gateway entry clones carrying promoters, terminators, and reporter genes, as well as elements of the LhG4/LhGR two-component system. This collection obeys simple engineering rules. The genetic elements (parts) are designed in a standard format. They are interchangeable, fully documented, and can be combined at will according to the desired output. We also took advantage of the MultiSite Gateway recombination sites to create vectors in which two or three genes can be cloned simultaneously in separate expression cassettes. To illustrate the flexibility of these core resources for the construction of a wide variety of plant transformation vectors, we generated various transgenes encoding fluorescent proteins and tested their activity in plant cells. The structure and sequence of all described plasmids are accessible online at http://www.psb.ugent.be/gateway/. All accessions can be requested via the same Web site.

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Year:  2007        PMID: 17965171      PMCID: PMC2151724          DOI: 10.1104/pp.107.110411

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  36 in total

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Authors:  M R Hanson; R H Köhler
Journal:  J Exp Bot       Date:  2001-04       Impact factor: 6.992

2.  Improved transcriptional activators and their use in mis-expression traps in Arabidopsis.

Authors:  Stephen Rutherford; Federica Brandizzi; Helen Townley; Judith Craft; Yibing Wang; Ian Jepson; Alberto Martinez; Ian Moore
Journal:  Plant J       Date:  2005-09       Impact factor: 6.417

3.  An improved method for fast, robust, and seamless integration of DNA fragments into multiple plasmids.

Authors:  Roger M Benoit; Ramon N Wilhelm; Daniela Scherer-Becker; Christian Ostermeier
Journal:  Protein Expr Purif       Date:  2005-10-25       Impact factor: 1.650

Review 4.  ORFeome cloning and systems biology: standardized mass production of the parts from the parts-list.

Authors:  Michael A Brasch; James L Hartley; Marc Vidal
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

5.  Intron-mediated enhancement of gene expression in maize (Zea mays L.) and bluegrass (Poa pratensis L.).

Authors:  P Vain; K R Finer; D E Engler; R C Pratt; J J Finer
Journal:  Plant Cell Rep       Date:  1996-03       Impact factor: 4.570

6.  Green-fluorescent protein fusions for efficient characterization of nuclear targeting.

Authors:  R J Grebenok; E Pierson; G M Lambert; F C Gong; C L Afonso; R Haldeman-Cahill; J C Carrington; D W Galbraith
Journal:  Plant J       Date:  1997-03       Impact factor: 6.417

7.  Selection-expression plasmid vectors for use in genetic transformation of higher plants.

Authors:  J Velten; J Schell
Journal:  Nucleic Acids Res       Date:  1985-10-11       Impact factor: 16.971

8.  Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana.

Authors:  S J Clough; A F Bent
Journal:  Plant J       Date:  1998-12       Impact factor: 6.417

9.  New pOp/LhG4 vectors for stringent glucocorticoid-dependent transgene expression in Arabidopsis.

Authors:  Judith Craft; Marketa Samalova; Celia Baroux; Helen Townley; Alberto Martinez; Ian Jepson; Miltos Tsiantis; Ian Moore
Journal:  Plant J       Date:  2005-03       Impact factor: 6.417

10.  Feasibility of genome-scale construction of promoter::reporter gene fusions for expression in Caenorhabditis elegans using a multisite gateway recombination system.

Authors:  Ian A Hope; Jonathan Stevens; Anna Garner; Josie Hayes; David L Cheo; Michael A Brasch; Marc Vidal
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

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  99 in total

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Authors:  Ramu S Vemanna; Babitha K Chandrashekar; H M Hanumantha Rao; Shailesh K Sathyanarayanagupta; K S Sarangi; Karaba N Nataraja; M Udayakumar
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Authors:  Elena Marin; Virginie Jouannet; Aurélie Herz; Annemarie S Lokerse; Dolf Weijers; Herve Vaucheret; Laurent Nussaume; Martin D Crespi; Alexis Maizel
Journal:  Plant Cell       Date:  2010-04-02       Impact factor: 11.277

3.  CLE peptides control Medicago truncatula nodulation locally and systemically.

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Journal:  Plant Physiol       Date:  2010-03-26       Impact factor: 8.340

4.  The Arabidopsis Na+/H+ antiporters NHX1 and NHX2 control vacuolar pH and K+ homeostasis to regulate growth, flower development, and reproduction.

Authors:  Elias Bassil; Hiromi Tajima; Yin-Chih Liang; Masa-Aki Ohto; Koichiro Ushijima; Ryohei Nakano; Tomoya Esumi; Ardian Coku; Mark Belmonte; Eduardo Blumwald
Journal:  Plant Cell       Date:  2011-09-27       Impact factor: 11.277

5.  HISTONE DEACETYLASE 9 stimulates auxin-dependent thermomorphogenesis in Arabidopsis thaliana by mediating H2A.Z depletion.

Authors:  Lennard C van der Woude; Giorgio Perrella; Basten L Snoek; Mark van Hoogdalem; Ondřej Novák; Marcel C van Verk; Heleen N van Kooten; Lennert E Zorn; Rolf Tonckens; Joram A Dongus; Myrthe Praat; Evelien A Stouten; Marcel C G Proveniers; Elisa Vellutini; Eirini Patitaki; Umidjon Shapulatov; Wouter Kohlen; Sureshkumar Balasubramanian; Karin Ljung; Alexander R van der Krol; Sjef Smeekens; Eirini Kaiserli; Martijn van Zanten
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-25       Impact factor: 11.205

Review 6.  Recombinational cloning with plant gateway vectors.

Authors:  Mansour Karimi; Ann Depicker; Pierre Hilson
Journal:  Plant Physiol       Date:  2007-12       Impact factor: 8.340

7.  Advanced expression vector systems: new weapons for plant research and biotechnology.

Authors:  Tzvi Tzfira; Stanislav V Kozlovsky; Vitaly Citovsky
Journal:  Plant Physiol       Date:  2007-12       Impact factor: 8.340

8.  Exocyst Subunit EXO70H4 Has a Specific Role in Callose Synthase Secretion and Silica Accumulation.

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Journal:  Plant Physiol       Date:  2018-01-04       Impact factor: 8.340

9.  Systematic localization of the Arabidopsis core cell cycle proteins reveals novel cell division complexes.

Authors:  Joanna Boruc; Evelien Mylle; Maria Duda; Rebecca De Clercq; Stephane Rombauts; Danny Geelen; Pierre Hilson; Dirk Inzé; Daniel Van Damme; Eugenia Russinova
Journal:  Plant Physiol       Date:  2009-12-16       Impact factor: 8.340

10.  Endocytosis of BRASSINOSTEROID INSENSITIVE1 Is Partly Driven by a Canonical Tyr-Based Motif.

Authors:  Derui Liu; Rahul Kumar; Lucas A N Claus; Alexander J Johnson; Wei Siao; Isabelle Vanhoutte; Peng Wang; Kyle W Bender; Klaas Yperman; Sara Martins; Xiuyang Zhao; Grégory Vert; Daniël Van Damme; Jiří Friml; Eugenia Russinova
Journal:  Plant Cell       Date:  2020-09-21       Impact factor: 11.277

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