Literature DB >> 31767749

HISTONE DEACETYLASE 9 stimulates auxin-dependent thermomorphogenesis in Arabidopsis thaliana by mediating H2A.Z depletion.

Lennard C van der Woude1, Giorgio Perrella2,3, Basten L Snoek4, Mark van Hoogdalem5, Ondřej Novák6,7, Marcel C van Verk4,8, Heleen N van Kooten1, Lennert E Zorn1, Rolf Tonckens1, Joram A Dongus1, Myrthe Praat1, Evelien A Stouten1, Marcel C G Proveniers1, Elisa Vellutini2, Eirini Patitaki2, Umidjon Shapulatov5, Wouter Kohlen9, Sureshkumar Balasubramanian10, Karin Ljung6, Alexander R van der Krol5, Sjef Smeekens1, Eirini Kaiserli2, Martijn van Zanten11.   

Abstract

Many plant species respond to unfavorable high ambient temperatures by adjusting their vegetative body plan to facilitate cooling. This process is known as thermomorphogenesis and is induced by the phytohormone auxin. Here, we demonstrate that the chromatin-modifying enzyme HISTONE DEACETYLASE 9 (HDA9) mediates thermomorphogenesis but does not interfere with hypocotyl elongation during shade avoidance. HDA9 is stabilized in response to high temperature and mediates histone deacetylation at the YUCCA8 locus, a rate-limiting enzyme in auxin biosynthesis, at warm temperatures. We show that HDA9 permits net eviction of the H2A.Z histone variant from nucleosomes associated with YUCCA8, allowing binding and transcriptional activation by PHYTOCHROME INTERACTING FACTOR 4, followed by auxin accumulation and thermomorphogenesis.

Entities:  

Keywords:  Arabidopsis; H2A.Z; HDA9; shade avoidance; thermomorphogenesis

Mesh:

Substances:

Year:  2019        PMID: 31767749      PMCID: PMC6911240          DOI: 10.1073/pnas.1911694116

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  79 in total

1.  Light receptor action is critical for maintaining plant biomass at warm ambient temperatures.

Authors:  Julia Foreman; Henrik Johansson; Patricia Hornitschek; Eve-Marie Josse; Christian Fankhauser; Karen J Halliday
Journal:  Plant J       Date:  2010-12-15       Impact factor: 6.417

2.  Histone deacetylase complex1 expression level titrates plant growth and abscisic acid sensitivity in Arabidopsis.

Authors:  Giorgio Perrella; Manuel A Lopez-Vernaza; Craig Carr; Emanuela Sani; Veronique Gosselé; Christoph Verduyn; Fabian Kellermeier; Matthew A Hannah; Anna Amtmann
Journal:  Plant Cell       Date:  2013-09-20       Impact factor: 11.277

3.  FCA mediates thermal adaptation of stem growth by attenuating auxin action in Arabidopsis.

Authors:  Hyo-Jun Lee; Jae-Hoon Jung; Lucas Cortés Llorca; Sang-Gyu Kim; Sangmin Lee; Ian T Baldwin; Chung-Mo Park
Journal:  Nat Commun       Date:  2014-11-17       Impact factor: 14.919

4.  SEUSS and PIF4 Coordinately Regulate Light and Temperature Signaling Pathways to Control Plant Growth.

Authors:  Junling Huai; Xinyu Zhang; Jialong Li; Tingting Ma; Ping Zha; Yanjun Jing; Rongcheng Lin
Journal:  Mol Plant       Date:  2018-05-02       Impact factor: 13.164

5.  Arabidopsis histone deacetylase HDA15 directly represses plant response to elevated ambient temperature.

Authors:  Yuan Shen; Tingting Lei; Xiaoyun Cui; Xiaoyun Liu; Shaoli Zhou; Yu Zheng; Florence Guérard; Emmanuelle Issakidis-Bourguet; Dao-Xiu Zhou
Journal:  Plant J       Date:  2019-09-12       Impact factor: 6.417

6.  Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana.

Authors:  S J Clough; A F Bent
Journal:  Plant J       Date:  1998-12       Impact factor: 6.417

7.  Mutations in the gene for the red/far-red light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development.

Authors:  J W Reed; P Nagpal; D S Poole; M Furuya; J Chory
Journal:  Plant Cell       Date:  1993-02       Impact factor: 11.277

8.  Reversible histone acetylation and deacetylation mediate genome-wide, promoter-dependent and locus-specific changes in gene expression during plant development.

Authors:  Lu Tian; M Paulus Fong; Jiyuan J Wang; Ning E Wei; Hongmei Jiang; R W Doerge; Z Jeffrey Chen
Journal:  Genetics       Date:  2004-09-15       Impact factor: 4.562

9.  Unexpected silencing effects from T-DNA tags in Arabidopsis.

Authors:  Lucia Daxinger; Ben Hunter; Mazhar Sheikh; Vincent Jauvion; Virginie Gasciolli; Hervé Vaucheret; Marjori Matzke; Ian Furner
Journal:  Trends Plant Sci       Date:  2008-01       Impact factor: 18.313

10.  HTSeq--a Python framework to work with high-throughput sequencing data.

Authors:  Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

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  25 in total

1.  Unique and contrasting effects of light and temperature cues on plant transcriptional programs.

Authors:  Mai Jarad; Rea Antoniou-Kourounioti; Jo Hepworth; Julia I Qüesta
Journal:  Transcription       Date:  2020-10-04

Review 2.  Transcriptional memory and response to adverse temperatures in plants.

Authors:  Wei Xie; Qianqian Tang; Fei Yan; Zeng Tao
Journal:  J Zhejiang Univ Sci B       Date:  2021-10-15       Impact factor: 3.066

3.  MEDIATOR SUBUNIT17 integrates jasmonate and auxin signaling pathways to regulate thermomorphogenesis.

Authors:  Rekha Agrawal; Mohan Sharma; Nidhi Dwivedi; Sourobh Maji; Pallabi Thakur; Alim Junaid; Jiří Fajkus; Ashverya Laxmi; Jitendra K Thakur
Journal:  Plant Physiol       Date:  2022-08-01       Impact factor: 8.005

4.  The histone H3K27 demethylase REF6/JMJ12 promotes thermomorphogenesis in Arabidopsis.

Authors:  Kaixuan He; Hailiang Mei; Jiaping Zhu; Qi Qiu; Xiaofeng Cao; Xian Deng
Journal:  Natl Sci Rev       Date:  2021-11-25       Impact factor: 23.178

Review 5.  Homeostasis of histone acetylation is critical for auxin signaling and root morphogenesis.

Authors:  Cuong Thach Nguyen; Gia-Buu Tran; Nguyen Hoai Nguyen
Journal:  Plant Mol Biol       Date:  2020-02-22       Impact factor: 4.076

6.  Arabidopsis cryptochrome 1 controls photomorphogenesis through regulation of H2A.Z deposition.

Authors:  Zhilei Mao; Xuxu Wei; Ling Li; Peng Xu; Jingyi Zhang; Wenxiu Wang; Tongtong Guo; Shuang Kou; Wanting Wang; Langxi Miao; Xiaoli Cao; Jiachen Zhao; Guangqiong Yang; Shilong Zhang; Hongli Lian; Hong-Quan Yang
Journal:  Plant Cell       Date:  2021-07-19       Impact factor: 11.277

7.  HOS15-PWR chromatin remodeling complex positively regulates cold stress in Arabidopsis.

Authors:  Chae Jin Lim; Akhtar Ali; Junghoon Park; Mingzhe Shen; Ki Suk Park; Dongwon Baek; Dea-Jin Yun
Journal:  Plant Signal Behav       Date:  2021-03-01

8.  BIC1 acts as a transcriptional coactivator to promote brassinosteroid signaling and plant growth.

Authors:  Zongju Yang; Baiqiang Yan; Huixue Dong; Guanhua He; Yun Zhou; Jiaqiang Sun
Journal:  EMBO J       Date:  2020-10-14       Impact factor: 11.598

9.  XBAT31 regulates thermoresponsive hypocotyl growth through mediating degradation of the thermosensor ELF3 in Arabidopsis.

Authors:  Lin Lin Zhang; Yu Jian Shao; Lan Ding; Mei Jing Wang; Seth Jon Davis; Jian Xiang Liu
Journal:  Sci Adv       Date:  2021-05-07       Impact factor: 14.136

10.  PHYTOCHROME-INTERACTING FACTORs trigger environmentally responsive chromatin dynamics in plants.

Authors:  Björn C Willige; Mark Zander; Chan Yul Yoo; Amy Phan; Renee M Garza; Shelly A Trigg; Yupeng He; Joseph R Nery; Huaming Chen; Meng Chen; Joseph R Ecker; Joanne Chory
Journal:  Nat Genet       Date:  2021-06-17       Impact factor: 41.307

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