Literature DB >> 17959267

Approaches for identifying targets of positive selection.

Jeffrey D Jensen1, Alex Wong, Charles F Aquadro.   

Abstract

Despite significant advancements in both empirical and theoretical population genetics throughout the past century, fundamental questions about the evolutionary forces that shape genomic diversity remain unresolved. Perhaps foremost among these are the strength and frequency of adaptive evolution. To quantify these parameters, statistical tools are needed that are capable of effectively identifying targets of positive selection throughout the genome in an unbiased manner, and functional approaches are needed that are capable of connecting these identified genotypes with the resulting adaptively significant phenotypes. Here we review recent advancements in both statistical and empirical methodology, and discuss important challenges and opportunities that remain as researchers continue to uncouple the relative importance of stochastic and deterministic factors in the evolution of natural populations.

Mesh:

Year:  2007        PMID: 17959267     DOI: 10.1016/j.tig.2007.08.009

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  34 in total

Review 1.  Evolutionary genomics of animal personality.

Authors:  Kees van Oers; Jakob C Mueller
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-12-27       Impact factor: 6.237

2.  Fitness analyses of all possible point mutations for regions of genes in yeast.

Authors:  Ryan Hietpas; Benjamin Roscoe; Li Jiang; Daniel N A Bolon
Journal:  Nat Protoc       Date:  2012-06-21       Impact factor: 13.491

3.  Integrating evolutionary and functional approaches to infer adaptation at specific loci.

Authors:  Jay F Storz; Christopher W Wheat
Journal:  Evolution       Date:  2010-09       Impact factor: 3.694

4.  A recent adaptive transposable element insertion near highly conserved developmental loci in Drosophila melanogaster.

Authors:  Josefa González; J Michael Macpherson; Dmitri A Petrov
Journal:  Mol Biol Evol       Date:  2009-05-20       Impact factor: 16.240

Review 5.  Functional primate genomics--leveraging the medical potential.

Authors:  Wolfgang Enard
Journal:  J Mol Med (Berl)       Date:  2012-05-04       Impact factor: 4.599

Review 6.  Genomic insights into adaptation to high-altitude environments.

Authors:  Z A Cheviron; R T Brumfield
Journal:  Heredity (Edinb)       Date:  2011-09-21       Impact factor: 3.821

7.  Adaptive divergence of a transcriptional enhancer between populations of Drosophila melanogaster.

Authors:  Amanda Glaser-Schmitt; Ana Catalán; John Parsch
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2013-11-11       Impact factor: 6.237

8.  Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags.

Authors:  Paul A Hohenlohe; Susan Bassham; Paul D Etter; Nicholas Stiffler; Eric A Johnson; William A Cresko
Journal:  PLoS Genet       Date:  2010-02-26       Impact factor: 5.917

9.  Adaptive Evolution Hotspots at the GC-Extremes of the Human Genome: Evidence for Two Functionally Distinct Pathways of Positive Selection.

Authors:  Clara S M Tang; Richard J Epstein
Journal:  Adv Bioinformatics       Date:  2010-05-03

10.  Landscape genomics and biased FST approaches reveal single nucleotide polymorphisms under selection in goat breeds of North-East Mediterranean.

Authors:  Lorraine Pariset; Stephane Joost; Paolo Ajmone Marsan; Alessio Valentini
Journal:  BMC Genet       Date:  2009-02-19       Impact factor: 2.797

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