Literature DB >> 17955269

Noninnocent effect of axial ligand on the heme degradation process: a theoretical approach to hydrolysis pathway of verdoheme to biliverdin.

Parisa R Jamaat1, Nasser Safari, Mina Ghiasi, S Shahab-al-din Naghavi, Mansour Zahedi.   

Abstract

Conversion of iron(II) verdoheme to iron(II) biliverdin in the presence of hydroxyl ion as a nucleophile and imidazole, pyridine, water, hydroxyl, cyanide, phenolate, chloride, thiolate and imidazolate as axial ligands was investigated using the B3LYP method and the 6-31G basis set. In the five-coordinated pathway the reactants and products are in the ground triplet state. In this path, hydroxyl ion directly attacks the macrocycle. The exothermic energy for addition of hydroxyl ion to iron(II) verdoheme with various ligands is 169.55, 166.34 and 164 kcal mol(-1) for water, pyridine and imidazole, energies which are around 30-60 kcal mol(-1) more exothermic than those for the other axial ligands used in this study. Therefore, imidazole, water and pyridine axial ligands can facilitate hydrolytic cleavage of iron(II) verdoheme to form open-chained helical iron(II) biliverdin complexes. The activation barrier for the conversion of iron(II) verdoheme hydroxyl species to the iron(II) biliverdin complex is estimated to be 5.2, 4.2, 4.35, 13.76 and 14.05 kcal mol(-1) for imidazole, water, cyanide, thiolate and imidazolate, respectively.

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Year:  2007        PMID: 17955269     DOI: 10.1007/s00775-007-0308-9

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  20 in total

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Authors:  Bernard Meunier; Samuël P de Visser; Sason Shaik
Journal:  Chem Rev       Date:  2004-09       Impact factor: 60.622

Review 2.  Heme oxygenase, steering dioxygen activation toward heme hydroxylation.

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3.  Coupled oxidation vs heme oxygenation: insights from axial ligand mutants of mitochondrial cytochrome b5.

Authors:  Ludivina Avila; Hong-wei Huang; Christopher O Damaso; Shen Lu; Pierre Moënne-Loccoz; Mario Rivera
Journal:  J Am Chem Soc       Date:  2003-04-09       Impact factor: 15.419

4.  Water-assisted oxo mechanism for heme metabolism.

Authors:  Takashi Kamachi; Kazunari Yoshizawa
Journal:  J Am Chem Soc       Date:  2005-08-03       Impact factor: 15.419

5.  Theoretical investigations of the hydrolysis pathway of verdoheme to biliverdin.

Authors:  Mahin Gheidi; Nasser Safari; Homayoon Bahrami; Mansour Zahedi
Journal:  J Inorg Biochem       Date:  2006-11-17       Impact factor: 4.155

6.  Theoretical investigations of the reactivity of verdoheme analogues: opening of the planar macrocycle by amide, dimethyl amide, and hydroxide nucleophiles to form helical biliverdin type complexes.

Authors:  Homayoon Bahrami; Mansour Zahedi; Nasser Safari
Journal:  J Inorg Biochem       Date:  2006-05-05       Impact factor: 4.155

7.  Heme oxygenase-1, intermediates in verdoheme formation and the requirement for reduction equivalents.

Authors:  Y Liu; P Moënne-Loccoz; T M Loehr; P R Ortiz de Montellano
Journal:  J Biol Chem       Date:  1997-03-14       Impact factor: 5.157

8.  On the role of the axial ligand in heme proteins: a theoretical study.

Authors:  Patrik Rydberg; Emma Sigfridsson; Ulf Ryde
Journal:  J Biol Inorg Chem       Date:  2004-01-15       Impact factor: 3.358

9.  Prevention of neonatal hyperbilirubinemia by tin protoporphyrin IX, a potent competitive inhibitor of heme oxidation.

Authors:  G S Drummond; A Kappas
Journal:  Proc Natl Acad Sci U S A       Date:  1981-10       Impact factor: 11.205

10.  Metallobiliverdin radicals--DFT studies.

Authors:  Ludmiła Szterenberg; Lechosław Latos-Grazyński; Jacek Wojaczyński
Journal:  Chemphyschem       Date:  2003-07-14       Impact factor: 3.102

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  2 in total

1.  Theoretical investigations on the hydrolysis pathway of tin verdoheme complexes: elucidation of tin's ring opening inhibition role.

Authors:  Mahdi D Davari; Homayoon Bahrami; Mansour Zahedi; Nasser Safari
Journal:  J Mol Model       Date:  2009-04-17       Impact factor: 1.810

2.  Unusual diheme conformation of the heme-degrading protein from Mycobacterium tuberculosis.

Authors:  Nicholas Chim; Angelina Iniguez; Tran Que Nguyen; Celia W Goulding
Journal:  J Mol Biol       Date:  2009-11-14       Impact factor: 5.469

  2 in total

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