Literature DB >> 17940277

A comparison of several methods for analyzing censored data.

Paul Hewett1, Gary H Ganser.   

Abstract

The purpose of this study was to compare the performance of several methods for statistically analyzing censored datasets [i.e. datasets that contain measurements that are less than the field limit-of-detection (LOD)] when estimating the 95th percentile and the mean of right-skewed occupational exposure data. The methods examined were several variations on the maximum likelihood estimation (MLE) and log-probit regression (LPR) methods, the common substitution methods, several non-parametric (NP) quantile methods for the 95th percentile and the NP Kaplan-Meier (KM) method. Each method was challenged with computer-generated censored datasets for a variety of plausible scenarios where the following factors were allowed to vary randomly within fairly wide ranges: the true geometric standard deviation, the censoring point or LOD and the sample size. This was repeated for both a single-laboratory scenario (i.e. single LOD) and a multiple-laboratory scenario (i.e. three LODs) as well as a single lognormal distribution scenario and a contaminated lognormal distribution scenario. Each method was used to estimate the 95th percentile and mean for the censored datasets (the NP quantile methods estimated only the 95th percentile). For each scenario, the method bias and overall imprecision (as indicated by the root mean square error or rMSE) were calculated for the 95th percentile and mean. No single method was unequivocally superior across all scenarios, although nearly all of the methods excelled in one or more scenarios. Overall, only the MLE- and LPR-based methods performed well across all scenarios, with the robust versions generally showing less bias than the standard versions when challenged with a contaminated lognormal distribution and multiple LODs. All of the MLE- and LPR-based methods were remarkably robust to departures from the lognormal assumption, nearly always having lower rMSE values than the NP methods for the exposure scenarios postulated. In general, the MLE methods tended to have smaller rMSE values than the LPR methods, particularly for the small sample size scenarios. The substitution methods tended to be strongly biased, but in some scenarios had the smaller rMSE values, especially for sample sizes <20. Surprisingly, the various NP methods were not as robust as expected, performing poorly in the contaminated distribution scenarios for both the 95th percentile and the mean. In conclusion, when using the rMSE rather than bias as the preferred comparison metric, the standard MLE method consistently outperformed the so-called robust variations of the MLE-based and LPR-based methods, as well as the various NP methods, for both the 95th percentile and the mean. When estimating the mean, the standard LPR method tended to outperform the robust LPR-based methods. Whenever bias is the main consideration, the robust MLE-based methods should be considered. The KM method, currently hailed by some as the preferred method for estimating the mean when the lognormal distribution assumption is questioned, did not perform well for either the 95th percentile or mean and is not recommended.

Mesh:

Year:  2007        PMID: 17940277     DOI: 10.1093/annhyg/mem045

Source DB:  PubMed          Journal:  Ann Occup Hyg        ISSN: 0003-4878


  44 in total

1.  Lasso regularization for left-censored Gaussian outcome and high-dimensional predictors.

Authors:  Perrine Soret; Marta Avalos; Linda Wittkop; Daniel Commenges; Rodolphe Thiébaut
Journal:  BMC Med Res Methodol       Date:  2018-12-04       Impact factor: 4.615

2.  Kitchen concentrations of fine particulate matter and particle number concentration in households using biomass cookstoves in rural Honduras.

Authors:  Megan L Benka-Coker; Jennifer L Peel; John Volckens; Nicholas Good; Kelsey R Bilsback; Christian L'Orange; Casey Quinn; Bonnie N Young; Sarah Rajkumar; Ander Wilson; Jessica Tryner; Sebastian Africano; Anibal B Osorto; Maggie L Clark
Journal:  Environ Pollut       Date:  2019-12-04       Impact factor: 8.071

3.  Method for analyzing left-censored bioassay data in large cohort studies.

Authors:  Jeri L Anderson; A Iulian Apostoaei
Journal:  J Expo Sci Environ Epidemiol       Date:  2015-05-13       Impact factor: 5.563

4.  A Comparison of the β-Substitution Method and a Bayesian Method for Analyzing Left-Censored Data.

Authors:  Tran Huynh; Harrison Quick; Gurumurthy Ramachandran; Sudipto Banerjee; Mark Stenzel; Dale P Sandler; Lawrence S Engel; Richard K Kwok; Aaron Blair; Patricia A Stewart
Journal:  Ann Occup Hyg       Date:  2015-07-24

5.  Radiofrequency-electromagnetic field exposures in kindergarten children.

Authors:  Chhavi Raj Bhatt; Mary Redmayne; Baki Billah; Michael J Abramson; Geza Benke
Journal:  J Expo Sci Environ Epidemiol       Date:  2016-10-19       Impact factor: 5.563

6.  Comparison of methods for analyzing left-censored occupational exposure data.

Authors:  Tran Huynh; Gurumurthy Ramachandran; Sudipto Banerjee; Joao Monteiro; Mark Stenzel; Dale P Sandler; Lawrence S Engel; Richard K Kwok; Aaron Blair; Patricia A Stewart
Journal:  Ann Occup Hyg       Date:  2014-09-26

7.  Association of brain-type natriuretic protein and cardiac troponin I with incipient cardiovascular disease in chimpanzees (Pan troglodytes).

Authors:  John J Ely; Tony Zavaskis; Michael L Lammey; Meg M Sleeper; D Rick Lee
Journal:  Comp Med       Date:  2011-04       Impact factor: 0.982

8.  Passive monitors to measure hydrogen sulfide near concentrated animal feeding operations.

Authors:  Brian T Pavilonis; Patrick T O'Shaughnessy; Ralph Altmaier; Nervana Metwali; Peter S Thorne
Journal:  Environ Sci Process Impacts       Date:  2013-06       Impact factor: 4.238

9.  Urban Enhancement of PM10 Bioaerosol Tracers Relative to Background Locations in the Midwestern United States.

Authors:  Chathurika M Rathnayake; Nervana Metwali; Zach Baker; Thilina Jayarathne; Pamela A Kostle; Peter S Thorne; Patrick T O'Shaughnessy; Elizabeth A Stone
Journal:  J Geophys Res Atmos       Date:  2016-05-12       Impact factor: 4.261

10.  Human health risk assessment of cadmium via dietary intake by children in Jiangsu Province, China.

Authors:  Yafei Zhang; Pei Liu; Cannan Wang; Yongning Wu
Journal:  Environ Geochem Health       Date:  2016-03-02       Impact factor: 4.609

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