Literature DB >> 17925388

Kinetics of the interactions between yeast elongation factors 1A and 1Balpha, guanine nucleotides, and aminoacyl-tRNA.

Kirill B Gromadski1, Tobias Schümmer, Anne Strømgaard, Charlotte R Knudsen, Terri Goss Kinzy, Marina V Rodnina.   

Abstract

The interactions of elongation factor 1A (eEF1A) from Saccharomyces cerevisiae with elongation factor 1Balpha (eEF1Balpha), guanine nucleotides, and aminoacyl-tRNA were studied kinetically by fluorescence stopped-flow. eEF1A has similar affinities for GDP and GTP, 0.4 and 1.1 microm, respectively. Dissociation of nucleotides from eEF1A in the absence of the guanine nucleotide exchange factor is slow (about 0.1 s(-1)) and is accelerated by eEF1Balpha by 320-fold and 250-fold for GDP and GTP, respectively. The rate constant of eEF1Balpha binding to eEF1A (10(7)-10(8) M (-1) s(-1)) is independent of guanine nucleotides. At the concentrations of nucleotides and factors prevailing in the cell, the overall exchange rate is expected to be in the range of 6 s(-1), which is compatible with the rate of protein synthesis in the cell. eEF1A.GTP binds Phe-tRNA(Phe) with a K(d) of 3 nm, whereas eEF1A.GDP shows no significant binding, indicating that eEF1A has similar tRNA binding properties as its prokaryotic homolog, EF-Tu.

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Year:  2007        PMID: 17925388      PMCID: PMC3269240          DOI: 10.1074/jbc.M707245200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  66 in total

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Authors:  J John; R Sohmen; J Feuerstein; R Linke; A Wittinghofer; R S Goody
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2.  Helix unwinding in the effector region of elongation factor EF-Tu-GDP.

Authors:  G Polekhina; S Thirup; M Kjeldgaard; P Nissen; C Lippmann; J Nyborg
Journal:  Structure       Date:  1996-10-15       Impact factor: 5.006

3.  Effects of nucleotide- and aurodox-induced changes in elongation factor Tu conformation upon its interactions with aminoacyl transfer RNA. A fluorescence study.

Authors:  V A Dell; D L Miller; A E Johnson
Journal:  Biochemistry       Date:  1990-02-20       Impact factor: 3.162

4.  Role of the conserved aspartate and phenylalanine residues in prokaryotic and mitochondrial elongation factor Ts in guanine nucleotide exchange.

Authors:  Y Zhang; X Li; L L Spremulli
Journal:  FEBS Lett       Date:  1996-08-12       Impact factor: 4.124

5.  Kinetic studies on the role of elongation factors 1 beta and 1 gamma in protein synthesis.

Authors:  G M Janssen; W Möller
Journal:  J Biol Chem       Date:  1988-02-05       Impact factor: 5.157

6.  Crystal structure of active elongation factor Tu reveals major domain rearrangements.

Authors:  H Berchtold; L Reshetnikova; C O Reiser; N K Schirmer; M Sprinzl; R Hilgenfeld
Journal:  Nature       Date:  1993-09-09       Impact factor: 49.962

7.  Transient conformational states of aminoacyl-tRNA during ribosome binding catalyzed by elongation factor Tu.

Authors:  M V Rodnina; R Fricke; W Wintermeyer
Journal:  Biochemistry       Date:  1994-10-11       Impact factor: 3.162

8.  Substrate and product structural requirements for binding of nucleotides to H-ras p21: the mechanism of discrimination between guanosine and adenosine nucleotides.

Authors:  H Rensland; J John; R Linke; I Simon; I Schlichting; A Wittinghofer; R S Goody
Journal:  Biochemistry       Date:  1995-01-17       Impact factor: 3.162

9.  The crystal structure of elongation factor G complexed with GDP, at 2.7 A resolution.

Authors:  J Czworkowski; J Wang; T A Steitz; P B Moore
Journal:  EMBO J       Date:  1994-08-15       Impact factor: 11.598

10.  F-actin sequesters elongation factor 1alpha from interaction with aminoacyl-tRNA in a pH-dependent reaction.

Authors:  G Liu; J Tang; B T Edmonds; J Murray; S Levin; J Condeelis
Journal:  J Cell Biol       Date:  1996-11       Impact factor: 10.539

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Journal:  J Biol Chem       Date:  2011-06-10       Impact factor: 5.157

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6.  The yeast rapid tRNA decay pathway competes with elongation factor 1A for substrate tRNAs and acts on tRNAs lacking one or more of several modifications.

Authors:  Joshua M Dewe; Joseph M Whipple; Irina Chernyakov; Laura N Jaramillo; Eric M Phizicky
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7.  The C-terminal Helix of Pseudomonas aeruginosa Elongation Factor Ts Tunes EF-Tu Dynamics to Modulate Nucleotide Exchange.

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8.  Yeast Trm7 interacts with distinct proteins for critical modifications of the tRNAPhe anticodon loop.

Authors:  Michael P Guy; Brandon M Podyma; Melanie A Preston; Hussam H Shaheen; Kady L Krivos; Patrick A Limbach; Anita K Hopper; Eric M Phizicky
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Review 9.  Translation Elongation and Recoding in Eukaryotes.

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10.  Elongation factor eEF1B modulates functions of the release factors eRF1 and eRF3 and the efficiency of translation termination in yeast.

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