Literature DB >> 17921342

Development and application of novel constructs to score C:G-to-T:A transitions and homologous recombination in Arabidopsis.

Gert Van der Auwera1, Joke Baute, Melanie Bauwens, Ingrid Peck, Denis Piette, Michael Pycke, Pieter Asselman, Anna Depicker.   

Abstract

We report on the development of five missense mutants and one recombination substrate of the beta-glucuronidase (GUS)-encoding gene of Escherichia coli and their use for detecting mutation and recombination events in transgenic Arabidopsis (Arabidopsis thaliana) plants by reactivation of GUS activity in clonal sectors. The missense mutants were designed to find C:G-to-T:A transitions in a symmetrical sequence context and are in that respect complementary to previously published GUS point mutants. Small peptide tags (hemagglutinin tag and Strep tag II) and green fluorescent protein were translationally fused to GUS, which offers possibilities to check for mutant GUS production levels. We show that spontaneous mutation and recombination events took place. Mutagenic treatment of the plants with ethyl methanesulfonate and ultraviolet-C increased the number of mutations, validating the use of these constructs to measure mutation and recombination frequencies in plants exposed to biotic or abiotic stress conditions, or in response to different genetic backgrounds. Plants were also subjected to heavy metals, methyl jasmonate, salicylic acid, and heat stress, for which no effect could be seen. Together with an ethyl methanesulfonate mutation induction level much higher than previously described, the need is illustrated for many available scoring systems in parallel. Because all GUS missense mutants were cloned in a bacterial expression vector, they can also be used to score mutation events in E. coli.

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Year:  2007        PMID: 17921342      PMCID: PMC2230553          DOI: 10.1104/pp.107.105213

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  36 in total

1.  In vitro evolution of beta-glucuronidase into a beta-galactosidase proceeds through non-specific intermediates.

Authors:  I Matsumura; A D Ellington
Journal:  J Mol Biol       Date:  2001-01-12       Impact factor: 5.469

Review 2.  Role of inverted DNA repeats in transcriptional and post-transcriptional gene silencing.

Authors:  M W Muskens; A P Vissers; J N Mol; J M Kooter
Journal:  Plant Mol Biol       Date:  2000-06       Impact factor: 4.076

3.  A transient assay in plant cells reveals a positive correlation between extrachromosomal recombination rates and length of homologous overlap.

Authors:  H Puchta; B Hohn
Journal:  Nucleic Acids Res       Date:  1991-05-25       Impact factor: 16.971

4.  Somatic intrachromosomal homologous recombination events in populations of plant siblings.

Authors:  H Puchta; P Swoboda; S Gal; M Blot; B Hohn
Journal:  Plant Mol Biol       Date:  1995-05       Impact factor: 4.076

5.  Transgenic plants are sensitive bioindicators of nuclear pollution caused by the Chernobyl accident.

Authors:  I Kovalchuk; O Kovalchuk; A Arkhipov; B Hohn
Journal:  Nat Biotechnol       Date:  1998-11       Impact factor: 54.908

6.  Cloning, sequencing, and expression of cDNA for human beta-glucuronidase.

Authors:  A Oshima; J W Kyle; R D Miller; J W Hoffmann; P P Powell; J H Grubb; W S Sly; M Tropak; K S Guise; R A Gravel
Journal:  Proc Natl Acad Sci U S A       Date:  1987-02       Impact factor: 11.205

7.  Genome-wide variation of the somatic mutation frequency in transgenic plants.

Authors:  I Kovalchuk; O Kovalchuk; B Hohn
Journal:  EMBO J       Date:  2000-09-01       Impact factor: 11.598

8.  Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana.

Authors:  S J Clough; A F Bent
Journal:  Plant J       Date:  1998-12       Impact factor: 6.417

9.  New pOp/LhG4 vectors for stringent glucocorticoid-dependent transgene expression in Arabidopsis.

Authors:  Judith Craft; Marketa Samalova; Celia Baroux; Helen Townley; Alberto Martinez; Ian Jepson; Miltos Tsiantis; Ian Moore
Journal:  Plant J       Date:  2005-03       Impact factor: 6.417

10.  Stress-induced intrachromosomal recombination in plant somatic cells.

Authors:  E G Lebel; J Masson; A Bogucki; J Paszkowski
Journal:  Proc Natl Acad Sci U S A       Date:  1993-01-15       Impact factor: 11.205

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  11 in total

1.  Construction of a supF-based system for detection of mutations in the chromosomal DNA of Arabidopsis.

Authors:  Keiichiro Hiratsu; Shiori Shiotani; Kozo Makino; Tatsuo Nunoshiba
Journal:  Mol Genet Genomics       Date:  2013-10-24       Impact factor: 3.291

Review 2.  Reevaluation of the reliability and usefulness of the somatic homologous recombination reporter lines.

Authors:  Bekir Ülker; Carl Maximilian Hommelsheim; Tobias Berson; Stefan Thomas; Balakumaran Chandrasekar; Ahmet Can Olcay; Kenneth Wayne Berendzen; Lamprinos Frantzeskakis
Journal:  Plant Cell       Date:  2012-11-09       Impact factor: 11.277

3.  Parental age affects somatic mutation rates in the progeny of flowering plants.

Authors:  Amit Kumar Singh; Tufail Bashir; Christian Sailer; Viswanathan Gurumoorthy; Anantha Maharasi Ramakrishnan; Shanmuhapreya Dhanapal; Ueli Grossniklaus; Ramamurthy Baskar
Journal:  Plant Physiol       Date:  2015-03-25       Impact factor: 8.340

4.  Reversion-reporter transgenes to analyze all six base-substitution pathways in Arabidopsis.

Authors:  Stephanie R Bollmann; Colin M Tominey; Peter D Hoffman; Taylor M C Hoffman; John B Hays
Journal:  Plant Physiol       Date:  2011-01-06       Impact factor: 8.340

5.  Genome stability in the uvh6 mutant of Arabidopsis thaliana.

Authors:  Andriy Bilichak; Youli Yao; Viktor Titov; Andrey Golubov; Igor Kovalchuk
Journal:  Plant Cell Rep       Date:  2014-02-20       Impact factor: 4.570

6.  Hybridization alters spontaneous mutation rates in a parent-of-origin-dependent fashion in Arabidopsis.

Authors:  Tufail Bashir; Christian Sailer; Florian Gerber; Nitin Loganathan; Hemadev Bhoopalan; Christof Eichenberger; Ueli Grossniklaus; Ramamurthy Baskar
Journal:  Plant Physiol       Date:  2014-03-24       Impact factor: 8.340

Review 7.  Transgenic Plants as Sensors of Environmental Pollution Genotoxicity.

Authors:  Igor Kovalchuk; Olga Kovalchuk
Journal:  Sensors (Basel)       Date:  2008-03-10       Impact factor: 3.576

8.  Transgenerational adaptation to heavy metal salts in Arabidopsis.

Authors:  Mohammad Reza Rahavi; Zoë Migicovsky; Viktor Titov; Igor Kovalchuk
Journal:  Front Plant Sci       Date:  2011-12-05       Impact factor: 5.753

9.  Phenotypic instability of Arabidopsis alleles affecting a disease Resistance gene cluster.

Authors:  Hankuil Yi; Eric J Richards
Journal:  BMC Plant Biol       Date:  2008-04-14       Impact factor: 4.215

10.  Suppression of different classes of somatic mutations in Arabidopsis by vir gene-expressing Agrobacterium strains.

Authors:  Jasmine M Shah; Anantha Maharasi Ramakrishnan; Amit Kumar Singh; Subalakshmi Ramachandran; Unnikrishnan Unniyampurath; Ajitha Jayshankar; Nithya Balasundaram; Shanmuhapreya Dhanapal; Geoff Hyde; Ramamurthy Baskar
Journal:  BMC Plant Biol       Date:  2015-08-26       Impact factor: 4.215

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