Literature DB >> 17913884

The transcription elongation factor TFIIS is a component of RNA polymerase II preinitiation complexes.

Bong Kim1, Alexey I Nesvizhskii, P Geetha Rani, Steven Hahn, Ruedi Aebersold, Jeffrey A Ranish.   

Abstract

In this article, we provide direct evidence that the evolutionarily conserved transcription elongation factor TFIIS functions during preinitiation complex assembly. First, we identified TFIIS in a mass spectrometric screen of RNA polymerase II (Pol II) preinitiation complexes (PICs). Second, we show that the association of TFIIS with a promoter depends on functional PIC components including Mediator and the SAGA complex. Third, we demonstrate that TFIIS is required for efficient formation of active PICs. Using truncation mutants of TFIIS, we find that the Pol II-binding domain is the minimal domain necessary to stimulate PIC assembly. However, efficient formation of active PICs requires both the Pol II-binding domain and the poorly understood N-terminal domain. Importantly, Domain III, which is required for the elongation function of TFIIS, is dispensable during PIC assembly. The results demonstrate that TFIIS is a PIC component that is required for efficient formation and/or stability of the complex.

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Year:  2007        PMID: 17913884      PMCID: PMC2042163          DOI: 10.1073/pnas.0704573104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  50 in total

1.  Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme.

Authors:  L Kuras; K Struhl
Journal:  Nature       Date:  1999-06-10       Impact factor: 49.962

Review 2.  Transcription elongation factor SII.

Authors:  M Wind; D Reines
Journal:  Bioessays       Date:  2000-04       Impact factor: 4.345

3.  Evidence that the elongation factor TFIIS plays a role in transcription initiation at GAL1 in Saccharomyces cerevisiae.

Authors:  Donald M Prather; Erica Larschan; Fred Winston
Journal:  Mol Cell Biol       Date:  2005-04       Impact factor: 4.272

4.  The yeast general transcription factor TFIIA is composed of two polypeptide subunits.

Authors:  J A Ranish; S Hahn
Journal:  J Biol Chem       Date:  1991-10-15       Impact factor: 5.157

5.  Functional organization of the yeast proteome by systematic analysis of protein complexes.

Authors:  Anne-Claude Gavin; Markus Bösche; Roland Krause; Paola Grandi; Martina Marzioch; Andreas Bauer; Jörg Schultz; Jens M Rick; Anne-Marie Michon; Cristina-Maria Cruciat; Marita Remor; Christian Höfert; Malgorzata Schelder; Miro Brajenovic; Heinz Ruffner; Alejandro Merino; Karin Klein; Manuela Hudak; David Dickson; Tatjana Rudi; Volker Gnau; Angela Bauch; Sonja Bastuck; Bettina Huhse; Christina Leutwein; Marie-Anne Heurtier; Richard R Copley; Angela Edelmann; Erich Querfurth; Vladimir Rybin; Gerard Drewes; Manfred Raida; Tewis Bouwmeester; Peer Bork; Bertrand Seraphin; Bernhard Kuster; Gitte Neubauer; Giulio Superti-Furga
Journal:  Nature       Date:  2002-01-10       Impact factor: 49.962

6.  The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins.

Authors:  G Orphanides; W H Wu; W S Lane; M Hampsey; D Reinberg
Journal:  Nature       Date:  1999-07-15       Impact factor: 49.962

7.  Evidence that Spt4, Spt5, and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevisiae.

Authors:  G A Hartzog; T Wada; H Handa; F Winston
Journal:  Genes Dev       Date:  1998-02-01       Impact factor: 11.361

8.  Genetic interactions between TFIIS and the Swi-Snf chromatin-remodeling complex.

Authors:  J K Davie; C M Kane
Journal:  Mol Cell Biol       Date:  2000-08       Impact factor: 4.272

9.  Yeast transcript elongation factor (TFIIS), structure and function. II: RNA polymerase binding, transcript cleavage, and read-through.

Authors:  D E Awrey; N Shimasaki; C Koth; R Weilbaecher; V Olmsted; S Kazanis; X Shan; J Arellano; C H Arrowsmith; C M Kane; A M Edwards
Journal:  J Biol Chem       Date:  1998-08-28       Impact factor: 5.157

Review 10.  Ordered recruitment: gene-specific mechanism of transcription activation.

Authors:  Maria Pia Cosma
Journal:  Mol Cell       Date:  2002-08       Impact factor: 17.970

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  62 in total

1.  The conserved foot domain of RNA pol II associates with proteins involved in transcriptional initiation and/or early elongation.

Authors:  M Carmen García-López; Vicent Pelechano; M Carmen Mirón-García; Ana I Garrido-Godino; Alicia García; Olga Calvo; Michel Werner; José E Pérez-Ortín; Francisco Navarro
Journal:  Genetics       Date:  2011-09-27       Impact factor: 4.562

2.  TFIIS elongation factor and Mediator act in conjunction during transcription initiation in vivo.

Authors:  Benjamin Guglielmi; Julie Soutourina; Cyril Esnault; Michel Werner
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-27       Impact factor: 11.205

3.  Genome-wide location analysis reveals a role of TFIIS in RNA polymerase III transcription.

Authors:  Yad Ghavi-Helm; Magali Michaut; Joël Acker; Jean-Christophe Aude; Pierre Thuriaux; Michel Werner; Julie Soutourina
Journal:  Genes Dev       Date:  2008-07-15       Impact factor: 11.361

4.  Position of the general transcription factor TFIIF within the RNA polymerase II transcription preinitiation complex.

Authors:  Jesse Eichner; Hung-Ta Chen; Linda Warfield; Steven Hahn
Journal:  EMBO J       Date:  2009-12-24       Impact factor: 11.598

5.  Site-directed mutagenesis, purification and assay of Saccharomyces cerevisiae RNA polymerase II.

Authors:  Céline Domecq; Maria Kireeva; Jacques Archambault; Mikhail Kashlev; Benoit Coulombe; Zachary F Burton
Journal:  Protein Expr Purif       Date:  2009-06-28       Impact factor: 1.650

6.  Analysis of Ipl1-mediated phosphorylation of the Ndc80 kinetochore protein in Saccharomyces cerevisiae.

Authors:  Bungo Akiyoshi; Christian R Nelson; Jeffrey A Ranish; Sue Biggins
Journal:  Genetics       Date:  2009-10-12       Impact factor: 4.562

7.  The multifunctional Ccr4-Not complex directly promotes transcription elongation.

Authors:  Jennifer A Kruk; Arnob Dutta; Jianhua Fu; David S Gilmour; Joseph C Reese
Journal:  Genes Dev       Date:  2011-03-15       Impact factor: 11.361

8.  Targeting tat inhibitors in the assembly of human immunodeficiency virus type 1 transcription complexes.

Authors:  Iván D'Orso; Jocelyn R Grunwell; Robert L Nakamura; Chandreyee Das; Alan D Frankel
Journal:  J Virol       Date:  2008-07-30       Impact factor: 5.103

9.  Transcriptome analysis of Frog virus 3, the type species of the genus Ranavirus, family Iridoviridae.

Authors:  S Majji; V Thodima; R Sample; D Whitley; Y Deng; J Mao; V G Chinchar
Journal:  Virology       Date:  2009-07-15       Impact factor: 3.616

10.  Identification, structure, and functional requirement of the Mediator submodule Med7N/31.

Authors:  Tobias Koschubs; Martin Seizl; Laurent Larivière; Fabian Kurth; Sonja Baumli; Dietmar E Martin; Patrick Cramer
Journal:  EMBO J       Date:  2008-12-04       Impact factor: 11.598

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