Literature DB >> 17889795

Analysis of microRNA effector functions in vitro.

Bingbing Wang1, John G Doench, Carl D Novina.   

Abstract

Analyses of gene functions in vitro provide the means to dissect biological phenomena. Development of cell-free assays for transcription, splicing, and translation has yielded great insights into macromolecular interactions and functions required for these processes. This article discusses development of cell-free assays to test macromolecular interactions and activities required for microRNA effector functions. This chapter also compares in vitro analyses to complementary studies in cells and the technical considerations that permit molecular analysis of microRNA function in cell-free conditions.

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Year:  2007        PMID: 17889795     DOI: 10.1016/j.ymeth.2007.04.003

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  11 in total

1.  Alternative RISC assembly: binding and repression of microRNA-mRNA duplexes by human Ago proteins.

Authors:  Maja M Janas; Bingbing Wang; Abigail S Harris; Mike Aguiar; Jonathan M Shaffer; Yerramilli V B K Subrahmanyam; Mark A Behlke; Kai W Wucherpfennig; Steven P Gygi; Etienne Gagnon; Carl D Novina
Journal:  RNA       Date:  2012-09-27       Impact factor: 4.942

2.  MicroRNA-repressed mRNAs contain 40S but not 60S components.

Authors:  Bingbing Wang; Adrienne Yanez; Carl D Novina
Journal:  Proc Natl Acad Sci U S A       Date:  2008-04-04       Impact factor: 11.205

Review 3.  Current approaches to micro-RNA analysis and target gene prediction.

Authors:  Tenzin W Lhakhang; M Ahmad Chaudhry
Journal:  J Appl Genet       Date:  2011-09-03       Impact factor: 3.240

Review 4.  MicroRNAs in inner ear biology and pathogenesis.

Authors:  Minal Patel; Bo Hua Hu
Journal:  Hear Res       Date:  2012-03-29       Impact factor: 3.208

5.  Validated MicroRNA Target Databases: An Evaluation.

Authors:  Yun Ji Diana Lee; Veronica Kim; Dillon C Muth; Kenneth W Witwer
Journal:  Drug Dev Res       Date:  2015-08-19       Impact factor: 4.360

6.  Distinct passenger strand and mRNA cleavage activities of human Argonaute proteins.

Authors:  Bingbing Wang; Shuqiang Li; Hank H Qi; Dipanjan Chowdhury; Yang Shi; Carl D Novina
Journal:  Nat Struct Mol Biol       Date:  2009-11-29       Impact factor: 15.369

7.  Transcriptome Analysis of Honeybee (Apis Mellifera) Haploid and Diploid Embryos Reveals Early Zygotic Transcription during Cleavage.

Authors:  Camilla Valente Pires; Flávia Cristina de Paula Freitas; Alexandre S Cristino; Peter K Dearden; Zilá Luz Paulino Simões
Journal:  PLoS One       Date:  2016-01-11       Impact factor: 3.240

8.  Identification of microRNAs in Helicoverpa armigera and Spodoptera litura based on deep sequencing and homology analysis.

Authors:  Xie Ge; Yong Zhang; Jianhao Jiang; Yi Zhong; Xiaonan Yang; Zhiqian Li; Yongping Huang; Anjiang Tan
Journal:  Int J Biol Sci       Date:  2012-12-01       Impact factor: 6.580

9.  Structural analysis of microRNA-target interaction by sequential seed mutagenesis and stem-loop 3' RACE.

Authors:  Marc Bohmer; Jutta Sharbati; Jennifer Zur Bruegge; Ralf Einspanier; Soroush Sharbati
Journal:  PLoS One       Date:  2013-11-25       Impact factor: 3.240

10.  A novel PCR-based approach to discover miRNA target genes.

Authors:  Shiwei Duan; Yunliang Wang; Hongwei Wang; Shufei Wang; Lindan Ji; Dongjun Dai; Danjie Jiang; Xiaoxi Zhang; Qiang Wang
Journal:  Int J Med Sci       Date:  2014-10-11       Impact factor: 3.738

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