Literature DB >> 17884090

A pi-helix switch selective for porphyrin deprotonation and product release in human ferrochelatase.

Amy E Medlock1, Tamara A Dailey, Teresa A Ross, Harry A Dailey, William N Lanzilotta.   

Abstract

Ferrochelatase (protoheme ferrolyase, EC 4.99.1.1) is the terminal enzyme in heme biosynthesis and catalyzes the insertion of ferrous iron into protoporphyrin IX to form protoheme IX (heme). Due to the many critical roles of heme, synthesis of heme is required by the vast majority of organisms. Despite significant investigation of both the microbial and eukaryotic enzyme, details of metal chelation remain unidentified. Here we present the first structure of the wild-type human enzyme, a lead-inhibited intermediate of the wild-type enzyme with bound metallated porphyrin macrocycle, the product bound form of the enzyme, and a higher resolution model for the substrate-bound form of the E343K variant. These data paint a picture of an enzyme that undergoes significant changes in secondary structure during the catalytic cycle. The role that these structural alterations play in overall catalysis and potential protein-protein interactions with other proteins, as well as the possible molecular basis for these changes, is discussed. The atomic details and structural rearrangements presented herein significantly advance our understanding of the substrate binding mode of ferrochelatase and reveal new conformational changes in a structurally conserved pi-helix that is predicted to have a central role in product release.

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Year:  2007        PMID: 17884090      PMCID: PMC2083577          DOI: 10.1016/j.jmb.2007.08.040

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  55 in total

1.  Structural and mechanistic basis of porphyrin metallation by ferrochelatase.

Authors:  D Lecerof; M Fodje; A Hansson; M Hansson; S Al-Karadaghi
Journal:  J Mol Biol       Date:  2000-03-17       Impact factor: 5.469

Review 2.  Structure, function, and formation of biological iron-sulfur clusters.

Authors:  Deborah C Johnson; Dennis R Dean; Archer D Smith; Michael K Johnson
Journal:  Annu Rev Biochem       Date:  2005       Impact factor: 23.643

3.  Metallation of the transition-state inhibitor N-methyl mesoporphyrin by ferrochelatase: implications for the catalytic reaction mechanism.

Authors:  Stepan Shipovskov; Tobias Karlberg; Michel Fodje; Mattias D Hansson; Gloria C Ferreira; Mats Hansson; Curt T Reimann; Salam Al-Karadaghi
Journal:  J Mol Biol       Date:  2005-10-07       Impact factor: 5.469

4.  Production and characterization of erythropoietic protoporphyric heterodimeric ferrochelatases.

Authors:  Wided Najahi-Missaoui; Harry A Dailey
Journal:  Blood       Date:  2005-04-14       Impact factor: 22.113

5.  Lack of heme synthesis in a free-living eukaryote.

Authors:  Anita U Rao; Lynn K Carta; Emmanuel Lesuisse; Iqbal Hamza
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-14       Impact factor: 11.205

6.  Human ferrochelatase: crystallization, characterization of the [2Fe-2S] cluster and determination that the enzyme is a homodimer.

Authors:  A E Burden; C Wu; T A Dailey; J L Busch; I K Dhawan; J P Rose; B Wang; H A Dailey
Journal:  Biochim Biophys Acta       Date:  1999-11-16

Review 7.  Ferrochelatase at the millennium: structures, mechanisms and [2Fe-2S] clusters.

Authors:  H A Dailey; T A Dailey; C K Wu; A E Medlock; K F Wang; J P Rose; B C Wang
Journal:  Cell Mol Life Sci       Date:  2000-12       Impact factor: 9.261

8.  The 2.0 A structure of human ferrochelatase, the terminal enzyme of heme biosynthesis.

Authors:  C K Wu; H A Dailey; J P Rose; A Burden; V M Sellers; B C Wang
Journal:  Nat Struct Biol       Date:  2001-02

9.  Altered orientation of active site residues in variants of human ferrochelatase. Evidence for a hydrogen bond network involved in catalysis.

Authors:  Harry A Dailey; Chia-Kuei Wu; Peter Horanyi; Amy E Medlock; Wided Najahi-Missaoui; Amy E Burden; Tamara A Dailey; John Rose
Journal:  Biochemistry       Date:  2007-06-14       Impact factor: 3.162

10.  Mitoferrin is essential for erythroid iron assimilation.

Authors:  George C Shaw; John J Cope; Liangtao Li; Kenneth Corson; Candace Hersey; Gabriele E Ackermann; Babette Gwynn; Amy J Lambert; Rebecca A Wingert; David Traver; Nikolaus S Trede; Bruce A Barut; Yi Zhou; Emmanuel Minet; Adriana Donovan; Alison Brownlie; Rena Balzan; Mitchell J Weiss; Luanne L Peters; Jerry Kaplan; Leonard I Zon; Barry H Paw
Journal:  Nature       Date:  2006-03-02       Impact factor: 49.962

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  35 in total

Review 1.  Structure and function of enzymes in heme biosynthesis.

Authors:  Gunhild Layer; Joachim Reichelt; Dieter Jahn; Dirk W Heinz
Journal:  Protein Sci       Date:  2010-06       Impact factor: 6.725

2.  Trapping a folding intermediate of the alpha-helix: stabilization of the pi-helix.

Authors:  Ross Chapman; John L Kulp; Anupam Patgiri; Neville R Kallenbach; Clay Bracken; Paramjit S Arora
Journal:  Biochemistry       Date:  2008-03-13       Impact factor: 3.162

Review 3.  One ring to rule them all: trafficking of heme and heme synthesis intermediates in the metazoans.

Authors:  Iqbal Hamza; Harry A Dailey
Journal:  Biochim Biophys Acta       Date:  2012-05-08

Review 4.  Heme biosynthesis and the porphyrias.

Authors:  John D Phillips
Journal:  Mol Genet Metab       Date:  2019-04-22       Impact factor: 4.797

5.  Bacterial ferrochelatase turns human: Tyr13 determines the apparent metal specificity of Bacillus subtilis ferrochelatase.

Authors:  Mattias D Hansson; Tobias Karlberg; Christopher A G Söderberg; Sreekanth Rajan; Martin J Warren; Salam Al-Karadaghi; Stephen E J Rigby; Mats Hansson
Journal:  J Biol Inorg Chem       Date:  2010-11-04       Impact factor: 3.358

Review 6.  The mitochondrial heme metabolon: Insights into the complex(ity) of heme synthesis and distribution.

Authors:  Robert B Piel; Harry A Dailey; Amy E Medlock
Journal:  Mol Genet Metab       Date:  2019-01-17       Impact factor: 4.797

7.  Investigation by MD simulation of the key residues related to substrate-binding and heme-release in human ferrochelatase.

Authors:  Yaxue Wang; Jingheng Wu; Jinqian Ju; Yong Shen
Journal:  J Mol Model       Date:  2013-02-28       Impact factor: 1.810

Review 8.  Erythroid heme biosynthesis and its disorders.

Authors:  Harry A Dailey; Peter N Meissner
Journal:  Cold Spring Harb Perspect Med       Date:  2013-04-01       Impact factor: 6.915

9.  Metal ion selectivity and substrate inhibition in the metal ion chelation catalyzed by human ferrochelatase.

Authors:  Ruth E Davidson; Christopher J Chesters; James D Reid
Journal:  J Biol Chem       Date:  2009-09-19       Impact factor: 5.157

10.  Product release rather than chelation determines metal specificity for ferrochelatase.

Authors:  Amy E Medlock; Michael Carter; Tamara A Dailey; Harry A Dailey; William N Lanzilotta
Journal:  J Mol Biol       Date:  2009-08-22       Impact factor: 5.469

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