Literature DB >> 17875429

Effects of osmolytes on protein folding and aggregation in cells.

Zoya Ignatova1, Lila M Gierasch.   

Abstract

Nature has developed many strategies to ensure that the complex and challenging protein folding reaction occurs in vivo with adequate efficiency and fidelity for the success of the organism. Among the strategies widely employed in a huge range of species and cell types is the elaboration of small organic molecules called osmolytes that offset the potentially damaging effects of osmotic stress. While considerable knowledge has been gained in vitro regarding the influence of osmolytes on protein structure and folding, it is of great interest to probe the effects of osmolytes in cells. We have developed an in-cell fluorescent-labeling method that enables the study of protein stability and also protein aggregation in vivo. We utilize a genetically encoded tag called a tetra-Cys motif that binds specifically to a bis-arsenical fluorescein-based dye "FlAsH"; we inserted the tetra-Cys motif into a protein of interest in such a way that the FlAsH signal reported on the state of folding or aggregation of the protein. Then, we designed protocols to assess how various osmolytes influence the stability and propensity to aggregate of our protein of interest. These are described here. Not only are there potential biotechnological applications of osmolytes in the quest to produce greater quantities of well-folded proteins, but also osmolytes may serve as tools and points of departure for therapeutic intervention in protein folding and aggregation diseases. Having in vivo methods to analyze how osmolytes affect folding and aggregation enhances our ability to further these goals greatly.

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Year:  2007        PMID: 17875429     DOI: 10.1016/S0076-6879(07)28021-8

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  11 in total

1.  Thermodynamics of protein destabilization in live cells.

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2.  Quinary interactions with an unfolded state ensemble.

Authors:  Rachel D Cohen; Gary J Pielak
Journal:  Protein Sci       Date:  2017-06-12       Impact factor: 6.725

3.  Exploring the Denatured State Ensemble by Single-Molecule Chemo-Mechanical Unfolding: The Effect of Force, Temperature, and Urea.

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Journal:  J Mol Biol       Date:  2017-08-04       Impact factor: 5.469

Review 4.  Effect of trehalose on protein structure.

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Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

5.  Quantitative Interpretation of Solvent Paramagnetic Relaxation for Probing Protein-Cosolute Interactions.

Authors:  Yusuke Okuno; Attila Szabo; G Marius Clore
Journal:  J Am Chem Soc       Date:  2020-04-24       Impact factor: 15.419

6.  Involvement of peptidylprolyl cis/trans isomerases in Enterococcus faecalis virulence.

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7.  A method for direct measurement of protein stability in vivo.

Authors:  Zoya Ignatova; Lila M Gierasch
Journal:  Methods Mol Biol       Date:  2009

8.  Osmolyte-Like Stabilizing Effects of Low GdnHCl Concentrations on d-Glucose/d-Galactose-Binding Protein.

Authors:  Alexander V Fonin; Alexandra D Golikova; Irina A Zvereva; Sabato D'Auria; Maria Staiano; Vladimir N Uversky; Irina M Kuznetsova; Konstantin K Turoverov
Journal:  Int J Mol Sci       Date:  2017-09-19       Impact factor: 5.923

9.  Salinity Tolerance Mechanism of Economic Halophytes From Physiological to Molecular Hierarchy for Improving Food Quality.

Authors:  Chongzhi Xu; Xiaoli Tang; Hongbo Shao; Hongyan Wang
Journal:  Curr Genomics       Date:  2016-06       Impact factor: 2.236

10.  Small Molecules Attenuate the Interplay between Conformational Fluctuations, Early Oligomerization and Amyloidosis of Alpha Synuclein.

Authors:  Sumanta Ghosh; Amrita Kundu; Krishnananda Chattopadhyay
Journal:  Sci Rep       Date:  2018-04-03       Impact factor: 4.379

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