Literature DB >> 17851070

Single-particle reconstruction from EM images of helical filaments.

Edward H Egelman1.   

Abstract

Helical filaments were the first structures to be reconstructed in three dimensions from electron microscopic images, and continue to be extensively studied due to the large number of such helical polymers found in biology. In principle, a single image of a helical polymer provides all of the different projections needed to reconstruct the three-dimensional structure. Unfortunately, many helical filaments have been refractory to the application of traditional (Fourier-Bessel) methods due to variability, heterogeneity, and weak scattering. Over the past several years, many of these problems have been surmounted using single-particle type approaches that can do substantially better than Fourier-Bessel approaches. Applications of these new methods to viruses, actin filaments, pili and many other polymers show the great advantages of the new methods.

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Year:  2007        PMID: 17851070      PMCID: PMC2443787          DOI: 10.1016/j.sbi.2007.07.006

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  32 in total

1.  A robust algorithm for the reconstruction of helical filaments using single-particle methods.

Authors:  E H Egelman
Journal:  Ultramicroscopy       Date:  2000-12       Impact factor: 2.689

2.  Complete atomic model of the bacterial flagellar filament by electron cryomicroscopy.

Authors:  Koji Yonekura; Saori Maki-Yonekura; Keiichi Namba
Journal:  Nature       Date:  2003-08-07       Impact factor: 49.962

3.  The 12 A structure of trypsin-treated measles virus N-RNA.

Authors:  Guy Schoehn; Manos Mavrakis; Aurélie Albertini; Richard Wade; Andreas Hoenger; Rob W H Ruigrok
Journal:  J Mol Biol       Date:  2004-05-28       Impact factor: 5.469

4.  Structure of the DNA-SspC complex: implications for DNA packaging, protection, and repair in bacterial spores.

Authors:  Daphna Frenkiel-Krispin; Rinat Sack; Joseph Englander; Eyal Shimoni; Miriam Eisenstein; Esther Bullitt; Rachel Horowitz-Scherer; Christopher S Hayes; Peter Setlow; Abraham Minsky; Sharon Grayer Wolf
Journal:  J Bacteriol       Date:  2004-06       Impact factor: 3.490

5.  Reconstruction of three dimensional structures from electron micrographs.

Authors:  D J De Rosier; A Klug
Journal:  Nature       Date:  1968-01-13       Impact factor: 49.962

6.  F-actin is a helix with a random variable twist.

Authors:  E H Egelman; N Francis; D J DeRosier
Journal:  Nature       Date:  1982-07-08       Impact factor: 49.962

7.  Conformational flexibility in recombinant measles virus nucleocapsids visualised by cryo-negative stain electron microscopy and real-space helical reconstruction.

Authors:  David Bhella; Adam Ralph; Robert Paul Yeo
Journal:  J Mol Biol       Date:  2004-07-02       Impact factor: 5.469

8.  Structure of the coat protein in fd filamentous bacteriophage particles determined by solid-state NMR spectroscopy.

Authors:  Ana Carolina Zeri; Michael F Mesleh; Alexander A Nevzorov; Stanley J Opella
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-15       Impact factor: 11.205

9.  Visualization of alpha-helices in tobacco mosaic virus by cryo-electron microscopy.

Authors:  T W Jeng; R A Crowther; G Stubbs; W Chiu
Journal:  J Mol Biol       Date:  1989-01-05       Impact factor: 5.469

10.  Structure and gating mechanism of the acetylcholine receptor pore.

Authors:  Atsuo Miyazawa; Yoshinori Fujiyoshi; Nigel Unwin
Journal:  Nature       Date:  2003-06-26       Impact factor: 49.962

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  15 in total

1.  Structural basis of membrane bending by the N-BAR protein endophilin.

Authors:  Carsten Mim; Haosheng Cui; Joseph A Gawronski-Salerno; Adam Frost; Edward Lyman; Gregory A Voth; Vinzenz M Unger
Journal:  Cell       Date:  2012-03-30       Impact factor: 41.582

Review 2.  Structural Variability in the RLR-MAVS Pathway and Sensitive Detection of Viral RNAs.

Authors:  Qiu-Xing Jiang
Journal:  Med Chem       Date:  2019       Impact factor: 2.745

Review 3.  Cryo-electron tomography of bacteria: progress, challenges and future prospects.

Authors:  Jacqueline L S Milne; Sriram Subramaniam
Journal:  Nat Rev Microbiol       Date:  2009-08-10       Impact factor: 60.633

Review 4.  Isolation, electron microscopy and 3D reconstruction of invertebrate muscle myofilaments.

Authors:  Roger Craig
Journal:  Methods       Date:  2011-12-02       Impact factor: 3.608

5.  Reconstruction of helical filaments and tubes.

Authors:  Edward H Egelman
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

6.  Helical filaments of human Dmc1 protein on single-stranded DNA: a cautionary tale.

Authors:  Xiong Yu; Edward H Egelman
Journal:  J Mol Biol       Date:  2010-06-30       Impact factor: 5.469

Review 7.  Three-dimensional reconstruction of helical polymers.

Authors:  Edward H Egelman
Journal:  Arch Biochem Biophys       Date:  2015-04-22       Impact factor: 4.013

8.  Three-dimensional reconstruction of tarantula myosin filaments suggests how phosphorylation may regulate myosin activity.

Authors:  Lorenzo Alamo; Willy Wriggers; Antonio Pinto; Fulvia Bártoli; Leiria Salazar; Fa-Qing Zhao; Roger Craig; Raúl Padrón
Journal:  J Mol Biol       Date:  2008-10-14       Impact factor: 5.469

9.  Helical assembly in the MyD88-IRAK4-IRAK2 complex in TLR/IL-1R signalling.

Authors:  Su-Chang Lin; Yu-Chih Lo; Hao Wu
Journal:  Nature       Date:  2010-05-19       Impact factor: 49.962

10.  Microtubule Tip Tracking by the Spindle and Kinetochore Protein Ska1 Requires Diverse Tubulin-Interacting Surfaces.

Authors:  Julie K Monda; Ian P Whitney; Ekaterina V Tarasovetc; Elizabeth Wilson-Kubalek; Ronald A Milligan; Ekaterina L Grishchuk; Iain M Cheeseman
Journal:  Curr Biol       Date:  2017-11-16       Impact factor: 10.834

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