Literature DB >> 16606319

Physical nature of bacterial cytoplasm.

Ido Golding1, Edward C Cox.   

Abstract

We track the motion of individual fluorescently labeled mRNA molecules inside live E. coli cells. We find that the motion is subdiffusive, with an exponent that is robust to physiological changes, including the disruption of cytoskeletal elements. By modifying the parameters of the RNA molecule and the bacterial cell, we are able to examine the possible mechanisms that can lead to this unique type of motion, especially the effect of macromolecular crowding. We also examine the implications of anomalous diffusion on the kinetics of bacterial gene regulation, in particular, how transcription factors find their DNA targets.

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Year:  2006        PMID: 16606319     DOI: 10.1103/PhysRevLett.96.098102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  125 in total

1.  Three-dimensional tracking of single mRNA particles in Saccharomyces cerevisiae using a double-helix point spread function.

Authors:  Michael A Thompson; Jason M Casolari; Majid Badieirostami; Patrick O Brown; W E Moerner
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

2.  Stochastic branching-diffusion models for gene expression.

Authors:  David Cottrell; Peter S Swain; Paul F Tupper
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-01       Impact factor: 11.205

3.  Analytical tools to distinguish the effects of localization error, confinement, and medium elasticity on the velocity autocorrelation function.

Authors:  Stephanie C Weber; Michael A Thompson; W E Moerner; Andrew J Spakowitz; Julie A Theriot
Journal:  Biophys J       Date:  2012-06-05       Impact factor: 4.033

4.  Anomalous diffusion reports on the interaction of misfolded proteins with the quality control machinery in the endoplasmic reticulum.

Authors:  Nina Malchus; Matthias Weiss
Journal:  Biophys J       Date:  2010-08-09       Impact factor: 4.033

5.  Geometry-controlled kinetics.

Authors:  O Bénichou; C Chevalier; J Klafter; B Meyer; R Voituriez
Journal:  Nat Chem       Date:  2010-04-18       Impact factor: 24.427

6.  Quantitative analysis of single particle trajectories: mean maximal excursion method.

Authors:  Vincent Tejedor; Olivier Bénichou; Raphael Voituriez; Ralf Jungmann; Friedrich Simmel; Christine Selhuber-Unkel; Lene B Oddershede; Ralf Metzler
Journal:  Biophys J       Date:  2010-04-07       Impact factor: 4.033

7.  Aging and nonergodicity beyond the Khinchin theorem.

Authors:  S Burov; R Metzler; E Barkai
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-12       Impact factor: 11.205

Review 8.  Poles apart: prokaryotic polar organelles and their spatial regulation.

Authors:  Clare L Kirkpatrick; Patrick H Viollier
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-03-01       Impact factor: 10.005

9.  Subdiffusive motion of bacteriophage in mucosal surfaces increases the frequency of bacterial encounters.

Authors:  Jeremy J Barr; Rita Auro; Nicholas Sam-Soon; Sam Kassegne; Gregory Peters; Natasha Bonilla; Mark Hatay; Sarah Mourtada; Barbara Bailey; Merry Youle; Ben Felts; Arlette Baljon; Jim Nulton; Peter Salamon; Forest Rohwer
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-19       Impact factor: 11.205

10.  Physical Modeling of Dynamic Coupling between Chromosomal Loci.

Authors:  Thomas J Lampo; Andrew S Kennard; Andrew J Spakowitz
Journal:  Biophys J       Date:  2016-01-19       Impact factor: 4.033

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