Literature DB >> 17822309

Strategy for automated analysis of dynamic metabolic mixtures by NMR. Application to an insect venom.

Fengli Zhang1, Aaron T Dossey, Cherian Zachariah, Arthur S Edison, Rafael Brüschweiler.   

Abstract

Elucidation of the composition of chemical-biological samples is a main focus of systems biology and metabolomics. Due to the inherent complexity of these mixtures, reliable, efficient, and potentially automatable methods are needed to identify the underlying metabolites and natural products. Because of its rich chemical information content, nuclear magnetic resonance (NMR) spectroscopy has a unique potential for this task. Here we present a generalization and application of a recently introduced NMR data collection, processing, and analysis strategy that circumvents the need for extensive purification and hyphenation prior to analysis. It uses covariance TOCSY NMR spectra measured on a 1-mm high-temperature cryogenic probe that are analyzed by a spectral trace clustering algorithm yielding 1D NMR spectra of the individual components for their unambiguous identification. The method is demonstrated on a metabolic model mixture and is then applied to the unpurified venom mixture of an individual walking stick insect that contains several slowly interconverting and closely related metabolites.

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Year:  2007        PMID: 17822309     DOI: 10.1021/ac0711586

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  23 in total

Review 1.  NMR-spectroscopic analysis of mixtures: from structure to function.

Authors:  Ry R Forseth; Frank C Schroeder
Journal:  Curr Opin Chem Biol       Date:  2010-11-09       Impact factor: 8.822

2.  An unexpected mixture of substances in the defensive secretions of the tubuliferan thrips, Callococcithrips fuscipennis (Moulton).

Authors:  Gunther Tschuch; Peter Lindemann; Gerald Moritz
Journal:  J Chem Ecol       Date:  2008-05-28       Impact factor: 2.626

3.  Elevated CO2 and virus infection impacts wheat and aphid metabolism.

Authors:  Simone Vassiliadis; Kim M Plummer; Kevin S Powell; Simone J Rochfort
Journal:  Metabolomics       Date:  2018-09-27       Impact factor: 4.290

4.  Identification of cryptic products of the gliotoxin gene cluster using NMR-based comparative metabolomics and a model for gliotoxin biosynthesis.

Authors:  Ry R Forseth; Ellen M Fox; DaWoon Chung; Barbara J Howlett; Nancy P Keller; Frank C Schroeder
Journal:  J Am Chem Soc       Date:  2011-06-06       Impact factor: 15.419

Review 5.  Advances in NMR-based biofluid analysis and metabolite profiling.

Authors:  Shucha Zhang; G A Nagana Gowda; Tao Ye; Daniel Raftery
Journal:  Analyst       Date:  2010-04-09       Impact factor: 4.616

6.  2D NMR-based metabolomics uncovers interactions between conserved biochemical pathways in the model organism Caenorhabditis elegans.

Authors:  Yevgeniy Izrayelit; Steven L Robinette; Neelanjan Bose; Stephan H von Reuss; Frank C Schroeder
Journal:  ACS Chem Biol       Date:  2012-11-26       Impact factor: 5.100

7.  Web server suite for complex mixture analysis by covariance NMR.

Authors:  Fengli Zhang; Steven L Robinette; Lei Bruschweiler-Li; Rafael Brüschweiler
Journal:  Magn Reson Chem       Date:  2009-12       Impact factor: 2.447

8.  NMR-spectroscopic screening of spider venom reveals sulfated nucleosides as major components for the brown recluse and related species.

Authors:  Frank C Schroeder; Andrew E Taggi; Matthew Gronquist; Rabia U Malik; Jacqualine B Grant; Thomas Eisner; Jerrold Meinwald
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-15       Impact factor: 11.205

9.  Bacterial attraction and quorum sensing inhibition in Caenorhabditis elegans exudates.

Authors:  Fatma Kaplan; Dayakar V Badri; Cherian Zachariah; Ramadan Ajredini; Francisco J Sandoval; Sanja Roje; Lanfang H Levine; Fengli Zhang; Steven L Robinette; Hans T Alborn; Wei Zhao; Michael Stadler; Rathika Nimalendran; Aaron T Dossey; Rafael Brüschweiler; Jorge M Vivanco; Arthur S Edison
Journal:  J Chem Ecol       Date:  2009-08-04       Impact factor: 2.626

10.  Alkyldimethylpyrazines in the defensive spray of Phyllium westwoodii: a first for order Phasmatodea.

Authors:  Aaron T Dossey; Marco Gottardo; John M Whitaker; William R Roush; Arthur S Edison
Journal:  J Chem Ecol       Date:  2009-08-15       Impact factor: 2.626

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