Literature DB >> 21071261

NMR-spectroscopic analysis of mixtures: from structure to function.

Ry R Forseth1, Frank C Schroeder.   

Abstract

NMR spectroscopy as a particularly information-rich method offers unique opportunities for improving the structural and functional characterization of metabolomes, which will be essential for advancing the understanding of many biological processes. Whereas traditionally NMR spectroscopy was mostly relegated to the characterization of pure compounds, the past few years have seen a surge of interest in using NMR-spectroscopic techniques for characterizing complex metabolite mixtures. Development of new methods was motivated partly by the realization that using NMR for the analysis of metabolite mixtures can help identify otherwise inaccessible small molecules, for example compounds that are prone to chemical decomposition and thus cannot be isolated. Furthermore, comparative metabolomics and statistical analyses of NMR spectra have proven highly effective at identifying novel and known metabolites that correlate with changes in genotype or phenotype. In this review, we provide an overview of the range of NMR-spectroscopic techniques recently developed for characterizing metabolite mixtures, including methods used in discovery-oriented natural product chemistry, in the study of metabolite biosynthesis and function, or for comparative analyses of entire metabolomes.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 21071261      PMCID: PMC3053045          DOI: 10.1016/j.cbpa.2010.10.010

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  44 in total

1.  Differential analysis of 2D NMR spectra: new natural products from a pilot-scale fungal extract library.

Authors:  Frank C Schroeder; Donna M Gibson; Alice C L Churchill; Punchapat Sojikul; Eric J Wursthorn; Stuart B Krasnoff; Jon Clardy
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

2.  Robust deconvolution of complex mixtures by covariance TOCSY spectroscopy.

Authors:  Fengli Zhang; Rafael Brüschweiler
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

3.  Identification of xanthurenic acid 8-O-beta-D-glucoside and xanthurenic acid 8-O-sulfate as human natriuretic hormones.

Authors:  Christopher D Cain; Frank C Schroeder; Stewart W Shankel; Mark Mitchnick; Michael Schmertzler; Neal S Bricker
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-31       Impact factor: 11.205

4.  Statistical correlation and projection methods for improved information recovery from diffusion-edited NMR spectra of biological samples.

Authors:  Leon M Smith; Anthony D Maher; Olivier Cloarec; Mattias Rantalainen; Huiru Tang; Paul Elliott; Jeremiah Stamler; John C Lindon; Elaine Holmes; Jeremy K Nicholson
Journal:  Anal Chem       Date:  2007-06-23       Impact factor: 6.986

5.  Strategy for automated analysis of dynamic metabolic mixtures by NMR. Application to an insect venom.

Authors:  Fengli Zhang; Aaron T Dossey; Cherian Zachariah; Arthur S Edison; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2007-09-07       Impact factor: 6.986

6.  Detection of urinary drug metabolite (xenometabolome) signatures in molecular epidemiology studies via statistical total correlation (NMR) spectroscopy.

Authors:  Elaine Holmes; Ruey Leng Loo; Olivier Cloarec; Muireann Coen; Huiru Tang; Elaine Maibaum; Stephen Bruce; Queenie Chan; Paul Elliott; Jeremiah Stamler; Ian D Wilson; John C Lindon; Jeremy K Nicholson
Journal:  Anal Chem       Date:  2007-02-27       Impact factor: 6.986

7.  The identification of bacillaene, the product of the PksX megacomplex in Bacillus subtilis.

Authors:  Rebecca A Butcher; Frank C Schroeder; Michael A Fischbach; Paul D Straight; Roberto Kolter; Christopher T Walsh; Jon Clardy
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-18       Impact factor: 11.205

8.  Liquid chromatography-atmospheric pressure photoionization-mass spectrometry analysis of triacylglycerol lipids--effects of mobile phases on sensitivity.

Authors:  Sheng-Suan Cai; Luke Chandler Short; Jack A Syage; Michael Potvin; Jonathan M Curtis
Journal:  J Chromatogr A       Date:  2007-10-10       Impact factor: 4.759

9.  Parectadial, a monoterpenoid from the defensive spray of Parectatosoma mocquerysi.

Authors:  Aaron T Dossey; Spencer S Walse; Oskar V Conle; Arthur S Edison
Journal:  J Nat Prod       Date:  2007-07-28       Impact factor: 4.050

10.  Small-molecule pheromones that control dauer development in Caenorhabditis elegans.

Authors:  Rebecca A Butcher; Masaki Fujita; Frank C Schroeder; Jon Clardy
Journal:  Nat Chem Biol       Date:  2007-06-10       Impact factor: 15.040

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  27 in total

1.  Identification of cryptic products of the gliotoxin gene cluster using NMR-based comparative metabolomics and a model for gliotoxin biosynthesis.

Authors:  Ry R Forseth; Ellen M Fox; DaWoon Chung; Barbara J Howlett; Nancy P Keller; Frank C Schroeder
Journal:  J Am Chem Soc       Date:  2011-06-06       Impact factor: 15.419

2.  Nematode signaling molecules derived from multimodular assembly of primary metabolic building blocks.

Authors:  Joshua J Yim; Neelanjan Bose; Jan M Meyer; Ralf J Sommer; Frank C Schroeder
Journal:  Org Lett       Date:  2015-03-18       Impact factor: 6.005

3.  Comparative metabolomics reveals endogenous ligands of DAF-12, a nuclear hormone receptor, regulating C. elegans development and lifespan.

Authors:  Parag Mahanti; Neelanjan Bose; Axel Bethke; Joshua C Judkins; Joshua Wollam; Kathleen J Dumas; Anna M Zimmerman; Sydney L Campbell; Patrick J Hu; Adam Antebi; Frank C Schroeder
Journal:  Cell Metab       Date:  2014-01-07       Impact factor: 27.287

Review 4.  Comparative mass spectrometry-based metabolomics strategies for the investigation of microbial secondary metabolites.

Authors:  Brett C Covington; John A McLean; Brian O Bachmann
Journal:  Nat Prod Rep       Date:  2017-01-04       Impact factor: 13.423

5.  Calling all hosts: Bacterial communication in situ.

Authors:  Jessica L Cleary; Alanna R Condren; Katherine E Zink; Laura M Sanchez
Journal:  Chem       Date:  2017-03-09       Impact factor: 22.804

Review 6.  Mass spectrometry of natural products: current, emerging and future technologies.

Authors:  Amina Bouslimani; Laura M Sanchez; Neha Garg; Pieter C Dorrestein
Journal:  Nat Prod Rep       Date:  2014-05-07       Impact factor: 13.423

7.  Correlating secondary metabolite production with genetic changes using differential analysis of 2D NMR spectra.

Authors:  Ry R Forseth; Frank C Schroeder
Journal:  Methods Mol Biol       Date:  2012

8.  Discovery of phosphonic acid natural products by mining the genomes of 10,000 actinomycetes.

Authors:  Kou-San Ju; Jiangtao Gao; James R Doroghazi; Kwo-Kwang A Wang; Christopher J Thibodeaux; Steven Li; Emily Metzger; John Fudala; Joleen Su; Jun Kai Zhang; Jaeheon Lee; Joel P Cioni; Bradley S Evans; Ryuichi Hirota; David P Labeda; Wilfred A van der Donk; William W Metcalf
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-31       Impact factor: 11.205

Review 9.  Multidimensional approaches to NMR-based metabolomics.

Authors:  Kerem Bingol; Rafael Brüschweiler
Journal:  Anal Chem       Date:  2013-11-22       Impact factor: 6.986

10.  Homologous NRPS-like gene clusters mediate redundant small-molecule biosynthesis in Aspergillus flavus.

Authors:  Ry R Forseth; Saori Amaike; Daniel Schwenk; Katharyn J Affeldt; Dirk Hoffmeister; Frank C Schroeder; Nancy P Keller
Journal:  Angew Chem Int Ed Engl       Date:  2012-12-20       Impact factor: 15.336

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