Literature DB >> 17773334

Van der waals surfaces in molecular modeling: implementation with real-time computer graphics.

P A Bash, N Pattabiraman, C Huang, T E Ferrin, R Langridge.   

Abstract

A method is described for generating van der Waals molecular surfaces with a real-time interactive calligraphic color display system. These surfaces maintain their proper representation during bond rotation and global transformations, and an interior atom removal method yields a comprehensible picture of the molecular surface for large molecules. Both algorithms are faster than previous methods. This combination provides a powerful tool for real-time interactive molecular modeling.

Year:  1983        PMID: 17773334     DOI: 10.1126/science.222.4630.1325

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  10 in total

1.  The pi-helix translates structure into function.

Authors:  T M Weaver
Journal:  Protein Sci       Date:  2000-01       Impact factor: 6.725

2.  Functional interaction of hybrid response elements with wild-type and mutant steroid hormone receptors.

Authors:  M Truss; G Chalepakis; E P Slater; S Mader; M Beato
Journal:  Mol Cell Biol       Date:  1991-06       Impact factor: 4.272

3.  A model for hormone receptor binding to the mouse mammary tumour virus regulatory element based on hydroxyl radical footprinting.

Authors:  G Chalepakis; J P Postma; M Beato
Journal:  Nucleic Acids Res       Date:  1988-11-11       Impact factor: 16.971

4.  Molecular mechanics of the interactions of spermine with DNA: DNA bending as a result of ligand binding.

Authors:  B G Feuerstein; N Pattabiraman; L J Marton
Journal:  Nucleic Acids Res       Date:  1990-03-11       Impact factor: 16.971

5.  Receptors for glucocorticosteroid and progesterone recognize distinct features of a DNA regulatory element.

Authors:  D von der Ahe; J M Renoir; T Buchou; E E Baulieu; M Beato
Journal:  Proc Natl Acad Sci U S A       Date:  1986-05       Impact factor: 11.205

6.  Molecular mechanical studies of d(CGTACG)2: complex of triostin A with the middle A - T base pairs in either Hoogsteen or Watson-Crick pairing.

Authors:  U C Singh; N Pattabiraman; R Langridge; P A Kollman
Journal:  Proc Natl Acad Sci U S A       Date:  1986-09       Impact factor: 11.205

7.  Enhancement and simplification of macromolecular images.

Authors:  K Namba; D L Caspar; G Stubbs
Journal:  Biophys J       Date:  1988-04       Impact factor: 4.033

8.  Phosphorylation of serine-46 in HPr, a key regulatory protein in bacteria, results in stabilization of its solution structure.

Authors:  K Pullen; P Rajagopal; B R Branchini; M E Huffine; J Reizer; M H Saier; J M Scholtz; R E Klevit
Journal:  Protein Sci       Date:  1995-12       Impact factor: 6.725

9.  Molecular structure and dynamics of cis(Z)-and trans(E)-flupenthixol and clopenthixol.

Authors:  I Sylte; S G Dahl
Journal:  Pharm Res       Date:  1991-04       Impact factor: 4.200

10.  Contactpoint analysis of the HeLa nuclear factor I recognition site reveals symmetrical binding at one side of the DNA helix.

Authors:  E de Vries; W van Driel; S J van den Heuvel; P C van der Vliet
Journal:  EMBO J       Date:  1987-01       Impact factor: 11.598

  10 in total

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