Literature DB >> 10739264

The pi-helix translates structure into function.

T M Weaver1.   

Abstract

A search for the occurrence of the rare pi-helix was performed with Iditis from the Oxford Molecular Group upon the Protein Data Bank. In 8 of the 10 confirmed crystal structures that harbor the pi-helix, its unique conformation has been linked directly to the formation or stabilization of a specific binding site within the protein. In the discussion to follow, the role for each of these eight pi-helices will be addressed in regard to protein function. It is clear upon closer examination that the conformation of the pi-helix has evolved to provide unique structural features within a variety of proteins.

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Year:  2000        PMID: 10739264      PMCID: PMC2144447          DOI: 10.1110/ps.9.1.201

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  27 in total

1.  Improved methods for building protein models in electron density maps and the location of errors in these models.

Authors:  T A Jones; J Y Zou; S W Cowan; M Kjeldgaard
Journal:  Acta Crystallogr A       Date:  1991-03-01       Impact factor: 2.290

2.  Atomic coordinates and structure factors for two helical configurations of polypeptide chains.

Authors:  L PAULING; R B COREY
Journal:  Proc Natl Acad Sci U S A       Date:  1951-05       Impact factor: 11.205

3.  Crystallographic studies of the catalytic and a second site in fumarase C from Escherichia coli.

Authors:  T Weaver; L Banaszak
Journal:  Biochemistry       Date:  1996-11-05       Impact factor: 3.162

Review 4.  Lipoxygenases: structural principles and spectroscopy.

Authors:  B J Gaffney
Journal:  Annu Rev Biophys Biomol Struct       Date:  1996

5.  Three-dimensional structure of a light chain dimer crystallized in water. Conformational flexibility of a molecule in two crystal forms.

Authors:  K R Ely; J N Herron; M Harker; A B Edmundson
Journal:  J Mol Biol       Date:  1989-12-05       Impact factor: 5.469

6.  Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.

Authors:  W Kabsch; C Sander
Journal:  Biopolymers       Date:  1983-12       Impact factor: 2.505

Review 7.  The structures and related functions of phosphorylase a.

Authors:  R J Fletterick; N B Madsen
Journal:  Annu Rev Biochem       Date:  1980       Impact factor: 23.643

8.  Catalytic site of glycogen phosphorylase: structural changes during activation and mechanistic implications.

Authors:  S G Withers; N B Madsen; S R Sprang; R J Fletterick
Journal:  Biochemistry       Date:  1982-10-12       Impact factor: 3.162

9.  The initial characterization of the iron environment in lipoxygenase by Mössbauer spectroscopy.

Authors:  W R Dunham; R T Carroll; J F Thompson; R H Sands; M O Funk
Journal:  Eur J Biochem       Date:  1990-07-05

10.  Kinetics of amide proton exchange in helical peptides of varying chain lengths. Interpretation by the Lifson-Roig equation.

Authors:  C A Rohl; J M Scholtz; E J York; J M Stewart; R L Baldwin
Journal:  Biochemistry       Date:  1992-02-11       Impact factor: 3.162

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  36 in total

1.  Molecular dynamics simulations of the E1/E2 transmembrane domain of the Semliki Forest virus.

Authors:  Ana Caballero-Herrera; Lennart Nilsson
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

2.  The role of alpha-, 3(10)-, and pi-helix in helix-->coil transitions.

Authors:  Roger Armen; Darwin O V Alonso; Valerie Daggett
Journal:  Protein Sci       Date:  2003-06       Impact factor: 6.725

3.  Creating novel protein scripts beyond natural alphabets.

Authors:  Anil Kumar; Vibin Ramakrishnan
Journal:  Syst Synth Biol       Date:  2011-03-01

4.  omega-Helices in proteins.

Authors:  Purevjav Enkhbayar; Bazartseren Boldgiv; Norio Matsushima
Journal:  Protein J       Date:  2010-05       Impact factor: 2.371

5.  Trapping a folding intermediate of the alpha-helix: stabilization of the pi-helix.

Authors:  Ross Chapman; John L Kulp; Anupam Patgiri; Neville R Kallenbach; Clay Bracken; Paramjit S Arora
Journal:  Biochemistry       Date:  2008-03-13       Impact factor: 3.162

6.  On the occurrence of linear groups in proteins.

Authors:  Scott A Hollingsworth; Donald S Berkholz; P Andrew Karplus
Journal:  Protein Sci       Date:  2009-06       Impact factor: 6.725

7.  An indel in transmembrane helix 2 helps to trace the molecular evolution of class A G-protein-coupled receptors.

Authors:  Julie Devillé; Julien Rey; Marie Chabbert
Journal:  J Mol Evol       Date:  2009-04-09       Impact factor: 2.395

8.  Geometry motivated alternative view on local protein backbone structures.

Authors:  Jan Zacharias; Ernst Walter Knapp
Journal:  Protein Sci       Date:  2013-09-30       Impact factor: 6.725

9.  Structure of CT584 from Chlamydia trachomatis refined to 3.05 Å resolution.

Authors:  Michael L Barta; John Hickey; Kyle E Kemege; Scott Lovell; Kevin P Battaile; P Scott Hefty
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-10-26

Review 10.  The role of π-helices in TRP channel gating.

Authors:  Lejla Zubcevic; Seok-Yong Lee
Journal:  Curr Opin Struct Biol       Date:  2019-08-02       Impact factor: 6.809

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