Literature DB >> 17763939

Quantifiable fluorescent glycan microarrays.

Xuezheng Song1, Baoyun Xia, Yi Lasanajak, David F Smith, Richard D Cummings.   

Abstract

A glycan microarray was developed by using 2,6-diaminopyridine (DAP) as a fluorescent linker and printing of the glycan-DAP conjugates (GDAPs) on epoxy-activated glass slides. Importantly, all coupled GDAPs showed a detectable level of concentration-dependent GDAP fluorescence under blue laser excitation (495 nm) that can be used for both grid location and on-slide quantification. A glycan array including a large number of GDAP's derived from natural and commercially available free glycans was constructed and glycan interactions with various plant lectins were investigated. In addition, binding parameters of lectins to glycans were obtained by varying both the amount of GDAPs on the array and the lectin concentration in analyses. These data demonstrate the general utility of GDAP microarrays for functional glycomic analyses and for determining binding parameters of glycan binding proteins (GBPs).

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Year:  2007        PMID: 17763939     DOI: 10.1007/s10719-007-9066-8

Source DB:  PubMed          Journal:  Glycoconj J        ISSN: 0282-0080            Impact factor:   2.916


  26 in total

1.  Arraying glycomics: a novel bi-functional spacer for one-step microscale derivatization of free reducing glycans.

Authors:  Ognian Bohorov; Hillevi Andersson-Sand; Julia Hoffmann; Ola Blixt
Journal:  Glycobiology       Date:  2006-09-12       Impact factor: 4.313

Review 2.  Glycomics: an integrated systems approach to structure-function relationships of glycans.

Authors:  Rahul Raman; S Raguram; Ganesh Venkataraman; James C Paulson; Ram Sasisekharan
Journal:  Nat Methods       Date:  2005-11       Impact factor: 28.547

3.  Versatile fluorescent derivatization of glycans for glycomic analysis.

Authors:  Baoyun Xia; Ziad S Kawar; Tongzhong Ju; Richard A Alvarez; Goverdhan P Sachdev; Richard D Cummings
Journal:  Nat Methods       Date:  2005-11       Impact factor: 28.547

4.  Characterization of two plant lectins from Ricinus communis and their quantitative interaction with a murine lymphoma.

Authors:  G L Nicolson; J Blaustein; M E Etzler
Journal:  Biochemistry       Date:  1974-01-01       Impact factor: 3.162

5.  Structural determinants of Ricinus communis agglutinin and toxin specificity for oligosaccharides.

Authors:  J U Baenziger; D Fiete
Journal:  J Biol Chem       Date:  1979-10-10       Impact factor: 5.157

6.  Optimizing processing parameters for signal enhancement of oligonucleotide and protein arrays on ARChip Epoxy.

Authors:  C Preininger; U Sauer; J Dayteg; R Pichler
Journal:  Bioelectrochemistry       Date:  2005-10       Impact factor: 5.373

7.  Printed covalent glycan array for ligand profiling of diverse glycan binding proteins.

Authors:  Ola Blixt; Steve Head; Tony Mondala; Christopher Scanlan; Margaret E Huflejt; Richard Alvarez; Marian C Bryan; Fabio Fazio; Daniel Calarese; James Stevens; Nahid Razi; David J Stevens; John J Skehel; Irma van Die; Dennis R Burton; Ian A Wilson; Richard Cummings; Nicolai Bovin; Chi-Huey Wong; James C Paulson
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-24       Impact factor: 11.205

Review 8.  Sweet spots in functional glycomics.

Authors:  James C Paulson; Ola Blixt; Brian E Collins
Journal:  Nat Chem Biol       Date:  2006-05       Impact factor: 15.040

Review 9.  Glycan arrays for functional glycomics.

Authors:  Kurt Drickamer; Maureen E Taylor
Journal:  Genome Biol       Date:  2002-11-27       Impact factor: 13.583

10.  Fractionation of L-fucose-containing oligosaccharides on immobilized Aleuria aurantia lectin.

Authors:  K Yamashita; N Kochibe; T Ohkura; I Ueda; A Kobata
Journal:  J Biol Chem       Date:  1985-04-25       Impact factor: 5.157

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  42 in total

Review 1.  Glycans as receptors for influenza pathogenesis.

Authors:  Karthik Viswanathan; Aarthi Chandrasekaran; Aravind Srinivasan; Rahul Raman; V Sasisekharan; Ram Sasisekharan
Journal:  Glycoconj J       Date:  2010-08-24       Impact factor: 2.916

2.  A versatile method for functionalizing surfaces with bioactive glycans.

Authors:  Fang Cheng; Jing Shang; Daniel M Ratner
Journal:  Bioconjug Chem       Date:  2010-12-10       Impact factor: 4.774

3.  At last, functional glycomics.

Authors:  Joseph Zaia
Journal:  Nat Methods       Date:  2011-01       Impact factor: 28.547

Review 4.  Glycan microarrays of fluorescently-tagged natural glycans.

Authors:  Xuezheng Song; Jamie Heimburg-Molinaro; David F Smith; Richard D Cummings
Journal:  Glycoconj J       Date:  2015-04-16       Impact factor: 2.916

5.  A sialylated glycan microarray reveals novel interactions of modified sialic acids with proteins and viruses.

Authors:  Xuezheng Song; Hai Yu; Xi Chen; Yi Lasanajak; Mary M Tappert; Gillian M Air; Vinod K Tiwari; Hongzhi Cao; Harshal A Chokhawala; Haojie Zheng; Richard D Cummings; David F Smith
Journal:  J Biol Chem       Date:  2011-07-12       Impact factor: 5.157

6.  High-sensitivity analysis of naturally occurring sugar chains, using a novel fluorescent linker molecule.

Authors:  Masaki Sato; Yuji Ito; Naomichi Arima; Masanori Baba; Michael Sobel; Masahiro Wakao; Yasuo Suda
Journal:  J Biochem       Date:  2009-03-06       Impact factor: 3.387

7.  Cross-platform comparison of glycan microarray formats.

Authors:  Linlin Wang; Richard D Cummings; David F Smith; Margaret Huflejt; Christopher T Campbell; Jeffrey C Gildersleeve; Jared Q Gerlach; Michelle Kilcoyne; Lokesh Joshi; Sonia Serna; Niels-Christian Reichardt; Núria Parera Pera; Roland J Pieters; William Eng; Lara K Mahal
Journal:  Glycobiology       Date:  2014-03-22       Impact factor: 4.313

8.  Novel fluorescent glycan microarray strategy reveals ligands for galectins.

Authors:  Xuezheng Song; Baoyun Xia; Sean R Stowell; Yi Lasanajak; David F Smith; Richard D Cummings
Journal:  Chem Biol       Date:  2009-01-30

9.  ICP-MS-based multiplex profiling of glycoproteins using lectins conjugated to lanthanide-chelating polymers.

Authors:  Michael D Leipold; Isaac Herrera; Olga Ornatsky; Vladimir Baranov; Mark Nitz
Journal:  J Proteome Res       Date:  2009-02       Impact factor: 4.466

10.  Facile construction of fluorescent peptide microarrays: One-step fluorescent derivatization of sub-microscale peptide aldehydes for selective terminal immobilization.

Authors:  He Dong; Xuezheng Song; Yi Lasanajak; Richard D Cummings; Elliot L Chaikof
Journal:  Anal Biochem       Date:  2009-11-10       Impact factor: 3.365

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