Literature DB >> 17745843

Taboo search: an approach to the multiple minima problem.

D Cvijovicacute, J Klinowski.   

Abstract

Described here is a method, based on Glover's taboo search for discrete functions, of solving the multiple minima problem for continuous functions. As demonstrated by model calculations, the algorithm avoids entrapment in local minima and continues the search to give a near-optimal final solution. Unlike other methods of global optimization, this procedure is generally applicable, easy to implement, derivative-free, and conceptually simple.

Year:  1995        PMID: 17745843     DOI: 10.1126/science.267.5198.664

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  12 in total

1.  Generation, comparison, and merging of pathways between protein conformations: gating in K-channels.

Authors:  Angela Enosh; Barak Raveh; Ora Furman-Schueler; Dan Halperin; Nir Ben-Tal
Journal:  Biophys J       Date:  2008-07-11       Impact factor: 4.033

2.  Structure optimization of the two-dimensional off-lattice hydrophobic-hydrophilic model.

Authors:  Jingfa Liu; Shengjun Xue; Duanbing Chen; Huantong Geng; Zhaoxia Liu
Journal:  J Biol Phys       Date:  2009-06-11       Impact factor: 1.365

Review 3.  Evolutionary algorithms in computer-aided molecular design.

Authors:  D E Clark; D R Westhead
Journal:  J Comput Aided Mol Des       Date:  1996-08       Impact factor: 3.686

4.  A comparison of heuristic search algorithms for molecular docking.

Authors:  D R Westhead; D E Clark; C W Murray
Journal:  J Comput Aided Mol Des       Date:  1997-05       Impact factor: 3.686

5.  Computational ligand-based rational design: Role of conformational sampling and force fields in model development.

Authors:  Jihyun Shim; Alexander D Mackerell
Journal:  Medchemcomm       Date:  2011-05       Impact factor: 3.597

Review 6.  Recent advances in ligand-based drug design: relevance and utility of the conformationally sampled pharmacophore approach.

Authors:  Chayan Acharya; Andrew Coop; James E Polli; Alexander D Mackerell
Journal:  Curr Comput Aided Drug Des       Date:  2011-03       Impact factor: 1.606

7.  Designing small multiple-target artificial RNAs.

Authors:  Vincent De Guire; Maxime Caron; Nicolas Scott; Catherine Ménard; Marie-France Gaumont-Leclerc; Pascal Chartrand; François Major; Gerardo Ferbeyre
Journal:  Nucleic Acids Res       Date:  2010-05-07       Impact factor: 16.971

8.  Single temperature for Monte Carlo optimization on complex landscapes.

Authors:  Denis Tolkunov; Alexandre V Morozov
Journal:  Phys Rev Lett       Date:  2012-06-20       Impact factor: 9.161

9.  Energy landscape and global optimization for a frustrated model protein.

Authors:  Mark T Oakley; David J Wales; Roy L Johnston
Journal:  J Phys Chem B       Date:  2011-09-09       Impact factor: 2.991

10.  Functional dissection of regulatory models using gene expression data of deletion mutants.

Authors:  Jin'e Li; Yi Liu; Min Liu; Jing-Dong J Han
Journal:  PLoS Genet       Date:  2013-09-05       Impact factor: 5.917

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