Literature DB >> 23004580

Single temperature for Monte Carlo optimization on complex landscapes.

Denis Tolkunov1, Alexandre V Morozov.   

Abstract

We propose a new strategy for Monte Carlo (MC) optimization on rugged multidimensional landscapes. The strategy is based on querying the statistical properties of the landscape in order to find the temperature at which the mean first passage time across the current region of the landscape is minimized. Thus, in contrast to other algorithms such as simulated annealing, we explicitly match the temperature schedule to the statistics of landscape irregularities. In cases where these statistics are approximately the same over the entire landscape or where nonlocal moves couple distant parts of the landscape, a single-temperature MC scheme outperforms any other MC algorithm with the same move set. We also find that in strongly anisotropic Coulomb spin glass and traveling salesman problems, the only relevant statistics (which we use to assign a single MC temperature) are those of irregularities in low-energy funnels. Our results may explain why protein folding is efficient at constant temperature.

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Year:  2012        PMID: 23004580      PMCID: PMC3459327          DOI: 10.1103/PhysRevLett.108.250602

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  6 in total

1.  Optimization on rugged landscapes: A new general purpose Monte Carlo approach.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-06-17       Impact factor: 9.161

2.  Monte Carlo simulation and global optimization without parameters.

Authors: 
Journal:  Phys Rev Lett       Date:  1995-03-20       Impact factor: 9.161

3.  Optimization by simulated annealing.

Authors:  S Kirkpatrick; C D Gelatt; M P Vecchi
Journal:  Science       Date:  1983-05-13       Impact factor: 47.728

4.  Taboo search: an approach to the multiple minima problem.

Authors:  D Cvijovicacute; J Klinowski
Journal:  Science       Date:  1995-02-03       Impact factor: 47.728

5.  Diffusion in a rough potential.

Authors:  R Zwanzig
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

6.  Funnels, pathways, and the energy landscape of protein folding: a synthesis.

Authors:  J D Bryngelson; J N Onuchic; N D Socci; P G Wolynes
Journal:  Proteins       Date:  1995-03
  6 in total
  1 in total

1.  A Biophysical Approach to Predicting Protein-DNA Binding Energetics.

Authors:  George Locke; Alexandre V Morozov
Journal:  Genetics       Date:  2015-06-16       Impact factor: 4.562

  1 in total

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