Literature DB >> 17717148

Brothers in arms: DNA enzymes, short interfering RNA, and the emerging wave of small-molecule nucleic acid-based gene-silencing strategies.

Ravinay Bhindi1, Roger G Fahmy, Harry C Lowe, Colin N Chesterman, Crispin R Dass, Murray J Cairns, Edward G Saravolac, Lun-Quan Sun, Levon M Khachigian.   

Abstract

The past decade has seen the rapid evolution of small-molecule gene-silencing strategies, driven largely by enhanced understanding of gene function in the pathogenesis of disease. Over this time, many genes have been targeted by specifically engineered agents from different classes of nucleic acid-based drugs in experimental models of disease to probe, dissect, and characterize further the complex processes that underpin molecular signaling. Arising from this, a number of molecules have been examined in the setting of clinical trials, and several have recently made the successful transition from the bench to the clinic, heralding an exciting era of gene-specific treatments. This is particularly important because clear inadequacies in present therapies account for significant morbidity, mortality, and cost. The broad umbrella of gene-silencing therapeutics encompasses a range of agents that include DNA enzymes, short interfering RNA, antisense oligonucleotides, decoys, ribozymes, and aptamers. This review tracks current movements in these technologies, focusing mainly on DNA enzymes and short interfering RNA, because these are poised to play an integral role in antigene therapies in the future.

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Year:  2007        PMID: 17717148      PMCID: PMC1988859          DOI: 10.2353/ajpath.2007.070120

Source DB:  PubMed          Journal:  Am J Pathol        ISSN: 0002-9440            Impact factor:   4.307


  122 in total

Review 1.  Nuclease-resistant synthetic ribozymes: developing a new class of therapeutics.

Authors:  N Usman; L M Blatt
Journal:  J Clin Invest       Date:  2000-11       Impact factor: 14.808

2.  Target site selection for an RNA-cleaving catalytic DNA.

Authors:  M J Cairns; T M Hopkins; C Witherington; L Wang; L Q Sun
Journal:  Nat Biotechnol       Date:  1999-05       Impact factor: 54.908

3.  Cellular uptake, distribution, and stability of 10-23 deoxyribozymes.

Authors:  Crispin R Dass; Edward G Saravolac; Yang Li; Lun-Quan Sun
Journal:  Antisense Nucleic Acid Drug Dev       Date:  2002-10

4.  Catalytic degradation of vitamin D up-regulated protein 1 mRNA enhances cardiomyocyte survival and prevents left ventricular remodeling after myocardial ischemia.

Authors:  Guosheng Xiang; Tetsunori Seki; Michael D Schuster; Piotr Witkowski; Andrew J Boyle; Fiona See; Timothy P Martens; Alfred Kocher; Hugo Sondermeijer; Henry Krum; Silviu Itescu
Journal:  J Biol Chem       Date:  2005-09-19       Impact factor: 5.157

5.  A phase I clinical trial of a ribozyme-based angiogenesis inhibitor targeting vascular endothelial growth factor receptor-1 for patients with refractory solid tumors.

Authors:  David E Weng; Paul A Masci; Susan F Radka; T Elise Jackson; Patricia A Weiss; Ram Ganapathi; Paul J Elson; William B Capra; Vann P Parker; Jennifer A Lockridge; J Wayne Cowens; Nassim Usman; Ernest C Borden
Journal:  Mol Cancer Ther       Date:  2005-06       Impact factor: 6.261

6.  The role of mPer1 in morphine dependence in mice.

Authors:  Y Liu; Y Wang; C Wan; W Zhou; T Peng; Y Liu; Z Wang; G Li; G Cornelisson; F Halberg
Journal:  Neuroscience       Date:  2005       Impact factor: 3.590

7.  Ex-vivo gene therapy of human vascular bypass grafts with E2F decoy: the PREVENT single-centre, randomised, controlled trial.

Authors:  M J Mann; A D Whittemore; M C Donaldson; M Belkin; M S Conte; J F Polak; E J Orav; A Ehsan; G Dell'Acqua; V J Dzau
Journal:  Lancet       Date:  1999-10-30       Impact factor: 79.321

8.  Therapeutic silencing of an endogenous gene by systemic administration of modified siRNAs.

Authors:  Jürgen Soutschek; Akin Akinc; Birgit Bramlage; Klaus Charisse; Rainer Constien; Mary Donoghue; Sayda Elbashir; Anke Geick; Philipp Hadwiger; Jens Harborth; Matthias John; Venkitasamy Kesavan; Gary Lavine; Rajendra K Pandey; Timothy Racie; Kallanthottathil G Rajeev; Ingo Röhl; Ivanka Toudjarska; Gang Wang; Silvio Wuschko; David Bumcrot; Victor Koteliansky; Stefan Limmer; Muthiah Manoharan; Hans-Peter Vornlocher
Journal:  Nature       Date:  2004-11-11       Impact factor: 49.962

9.  Inhibition of human breast carcinoma proliferation, migration, chemoinvasion and solid tumour growth by DNAzymes targeting the zinc finger transcription factor EGR-1.

Authors:  Ainslie Mitchell; Crispin R Dass; Lun-Quan Sun; Levon M Khachigian
Journal:  Nucleic Acids Res       Date:  2004-06-04       Impact factor: 16.971

Review 10.  Harnessing in vivo siRNA delivery for drug discovery and therapeutic development.

Authors:  Frank Y Xie; Martin C Woodle; Patrick Y Lu
Journal:  Drug Discov Today       Date:  2006-01       Impact factor: 7.851

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  19 in total

Review 1.  Epigenetic principles and mechanisms underlying nervous system functions in health and disease.

Authors:  Mark F Mehler
Journal:  Prog Neurobiol       Date:  2008-10-17       Impact factor: 11.685

Review 2.  DNAzymes and cardiovascular disease.

Authors:  V L Benson; L M Khachigian; H C Lowe
Journal:  Br J Pharmacol       Date:  2008-05-05       Impact factor: 8.739

3.  Melanoma protective antitumor immunity activated by catalytic DNA.

Authors:  Hong Cai; Eun-Ae Cho; Yue Li; Jim Sockler; Christopher R Parish; Beng H Chong; Jarem Edwards; Tristan J Dodds; Peter M Ferguson; James S Wilmott; Richard A Scolyer; Gary M Halliday; Levon M Khachigian
Journal:  Oncogene       Date:  2018-05-29       Impact factor: 9.867

Review 4.  Experimental therapeutics in hereditary neuropathies: the past, the present, and the future.

Authors:  David N Herrmann
Journal:  Neurotherapeutics       Date:  2008-10       Impact factor: 7.620

5.  Antiangiogenic and antitumoral effects mediated by a vascular endothelial growth factor receptor 1 (VEGFR-1)-targeted DNAzyme.

Authors:  Liangfang Shen; Qin Zhou; Ying Wang; Weihua Liao; Yan Chen; Zhijie Xu; Lifang Yang; Lun-Quan Sun
Journal:  Mol Med       Date:  2013-11-08       Impact factor: 6.354

Review 6.  Challenging the future of siRNA therapeutics against cancer: the crucial role of nanotechnology.

Authors:  Lígia Catarina Gomes-da-Silva; Sérgio Simões; João Nuno Moreira
Journal:  Cell Mol Life Sci       Date:  2013-11-13       Impact factor: 9.261

7.  Destroying c-jun Messenger: new insights into biological mechanisms of DNAzyme function.

Authors:  Levon M Khachigian; Hong Cai; Fergal J Moloney; Christopher R Parish; Beng H Chong; Roland Stocker; Ross St C Barnetson; Gary M Halliday
Journal:  Oncotarget       Date:  2012-06

8.  Reduced retinal microvascular density, improved forepaw reach, comparative microarray and gene set enrichment analysis with c-jun targeting DNA enzyme.

Authors:  Cecilia W S Chan; Warren Kaplan; Christopher R Parish; Levon M Khachigian
Journal:  PLoS One       Date:  2012-07-17       Impact factor: 3.240

9.  Ribozyme-mediated gene knock down strategy to dissect the consequences of PDGF stimulation in vascular smooth muscle cells.

Authors:  Caterina Lande; Claudia Boccardi; Lorenzo Citti; Alberto Mercatanti; Milena Rizzo; Silvia Rocchiccioli; Lorena Tedeschi; Maria Giovanna Trivella; Antonella Cecchettini
Journal:  BMC Res Notes       Date:  2012-07-10

10.  High-performance method for specific effect on nucleic acids in cells using TiO2~DNA nanocomposites.

Authors:  Asya S Levina; Marina N Repkova; Zinfer R Ismagilov; Nadezhda V Shikina; Ernst G Malygin; Natalia A Mazurkova; Victor V Zinov'ev; Alexei A Evdokimov; Sergei I Baiborodin; Valentina F Zarytova
Journal:  Sci Rep       Date:  2012-10-22       Impact factor: 4.379

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